Analysis of interatomic Contacts of Structural Units in PDB entry:
8YP7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YP7 entry

There is 1 chain in PDB entry 8YP7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 3MET 470
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 8YP7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 31Right-handed alpha
Helix 2
AA2
A
47 56Right-handed alpha
Helix 3
AA3
A
83 94Right-handed alpha
Helix 4
AA4
A
95 110Right-handed alpha
Helix 5
AA5
A
121 123Right-handed 310
Helix 6
AA6
A
124 132Right-handed alpha
Helix 7
AA7
A
142 159Right-handed alpha
Helix 8
AA8
A
179 183Right-handed 310
Helix 9
AA9
A
184 188Right-handed 310
Helix 10
AB1
A
192 205Right-handed alpha
Helix 11
AB2
A
206 208Right-handed 310
Helix 12
AB3
A
220 228Right-handed alpha
Helix 13
AB4
A
254 263Right-handed alpha
Helix 14
AB5
A
281 296Right-handed alpha
Helix 15
AB6
A
310 315Right-handed alpha
Helix 16
AB7
A
322 327Right-handed 310
Helix 17
AB8
A
330 335Right-handed alpha
Helix 18
AB9
A
347 353Right-handed alpha
Helix 19
AC1
A
365 375Right-handed alpha
Helix 20
AC2
A
385 398Right-handed alpha
Helix 21
AC3
A
414 427Right-handed alpha
Helix 22
AC4
A
428 449Right-handed alpha
Helix 23
AC5
A
453 469Right-handed alpha
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There are 2 sheets in PDB entry 8YP7. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 65first strand
Strand 2
A
35 40parallel
Strand 3
A
5 10parallel
Strand 4
A
111 117parallel
Strand 5
A
134 139parallel
Strand 6
A
210 213parallel
Strand 7
A
237 239parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 343first strand
Strand 2
A
298 303parallel
Strand 3
A
269 273parallel
Strand 4
A
357 362parallel
Strand 5
A
379 381parallel
Strand 6
A
402 403parallel
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