Analysis of interatomic Contacts of Structural Units in PDB entry:
8YP9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YP9 entry

There are 3 chains in PDB entry 8YP9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 326
B
 THR 5GLU 322
C
 ALA 4GLN 324
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 8YP9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 8Right-handed 310
Helix 2
AA2
A
34 47Right-handed alpha
Helix 3
AA3
A
54 58Right-handed 310
Helix 4
AA4
A
59 74Right-handed alpha
Helix 5
AA5
A
78 82Right-handed 310
Helix 6
AA6
A
89 93Right-handed 310
Helix 7
AA7
A
94 110Right-handed alpha
Helix 8
AA8
A
144 150Right-handed alpha
Helix 9
AA9
A
151 164Right-handed alpha
Helix 10
AB1
A
176 187Right-handed alpha
Helix 11
AB2
A
204 213Right-handed alpha
Helix 12
AB3
A
236 239Right-handed 310
Helix 13
AB4
A
240 250Right-handed alpha
Helix 14
AB5
A
253 266Right-handed alpha
Helix 15
AB6
A
275 283Right-handed alpha
Helix 16
AB7
A
289 302Right-handed alpha
Helix 17
AB8
A
311 316Right-handed alpha
Helix 18
AB9
B
34 47Right-handed alpha
Helix 19
AC1
B
54 58Right-handed 310
Helix 20
AC2
B
59 74Right-handed alpha
Helix 21
AC3
B
78 82Right-handed 310
Helix 22
AC4
B
89 93Right-handed 310
Helix 23
AC5
B
94 110Right-handed alpha
Helix 24
AC6
B
144 150Right-handed alpha
Helix 25
AC7
B
151 164Right-handed alpha
Helix 26
AC8
B
176 187Right-handed alpha
Helix 27
AC9
B
204 214Right-handed alpha
Helix 28
AD1
B
236 239Right-handed 310
Helix 29
AD2
B
240 250Right-handed alpha
Helix 30
AD3
B
253 265Right-handed alpha
Helix 31
AD4
B
275 283Right-handed alpha
Helix 32
AD5
B
289 302Right-handed alpha
Helix 33
AD6
B
311 316Right-handed alpha
Helix 34
AD7
C
34 47Right-handed alpha
Helix 35
AD8
C
54 58Right-handed 310
Helix 36
AD9
C
59 74Right-handed alpha
Helix 37
AE1
C
78 82Right-handed 310
Helix 38
AE2
C
89 93Right-handed 310
Helix 39
AE3
C
94 110Right-handed alpha
Helix 40
AE4
C
144 150Right-handed alpha
Helix 41
AE5
C
151 164Right-handed alpha
Helix 42
AE6
C
176 187Right-handed alpha
Helix 43
AE7
C
204 214Right-handed alpha
Helix 44
AE8
C
236 239Right-handed 310
Helix 45
AE9
C
240 251Right-handed alpha
Helix 46
AF1
C
253 266Right-handed alpha
Helix 47
AF2
C
275 283Right-handed alpha
Helix 48
AF3
C
289 302Right-handed alpha
Helix 49
AF4
C
311 316Right-handed alpha
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There are 6 sheets in PDB entry 8YP9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 12first strand
Strand 2
A
18 20anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 25first strand
Strand 2
A
50 52parallel
Strand 3
A
83 88parallel
Strand 4
A
116 119parallel
Strand 5
A
170 173parallel
Strand 6
A
193 197parallel
Strand 7
A
217 221parallel
Strand 8
A
268 269parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
18 20anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 25first strand
Strand 2
B
50 52parallel
Strand 3
B
83 88parallel
Strand 4
B
116 119parallel
Strand 5
B
170 173parallel
Strand 6
B
193 197parallel
Strand 7
B
217 221parallel
Strand 8
B
268 269parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 12first strand
Strand 2
C
18 20anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
24 25first strand
Strand 2
C
50 52parallel
Strand 3
C
83 88parallel
Strand 4
C
116 119parallel
Strand 5
C
170 173parallel
Strand 6
C
193 197parallel
Strand 7
C
217 221parallel
Strand 8
C
268 269parallel
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