Analysis of interatomic Contacts of Structural Units in PDB entry:
8YPB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YPB entry

There are 28 chains in PDB entry 8YPB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
b
 SER 6LEU 47
F
 SER 2VAL 54
A
 SER 6LEU 47
B
 SER 2VAL 54
C
 SER 6LEU 47
D
 SER 2VAL 54
E
 SER 6LEU 47
G
 SER 2VAL 54
H
 SER 6LEU 47
I
 SER 2VAL 54
J
 SER 6LEU 47
K
 SER 2VAL 54
L
 SER 6LEU 47
M
 SER 2VAL 54
N
 SER 6LEU 47
O
 SER 2VAL 54
P
 SER 6LEU 47
Q
 SER 2VAL 54
R
 SER 6LEU 47
S
 SER 2VAL 54
T
 SER 6LEU 47
U
 SER 2VAL 54
V
 SER 6LEU 47
W
 SER 2VAL 54
X
 SER 6LEU 47
Y
 SER 2VAL 54
Z
 SER 6LEU 47
a
 SER 2VAL 54
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 8YPB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
b
11 44Right-handed alpha
Helix 2
AA2
F
2 11Right-handed 310
Helix 3
AA3
F
13 39Right-handed alpha
Helix 4
AA4
A
11 44Right-handed alpha
Helix 5
AA5
B
4 11Right-handed 310
Helix 6
AA6
B
13 39Right-handed alpha
Helix 7
AA7
C
11 44Right-handed alpha
Helix 8
AA8
D
2 11Right-handed 310
Helix 9
AA9
D
13 39Right-handed alpha
Helix 10
AB1
E
11 44Right-handed alpha
Helix 11
AB2
G
2 11Right-handed 310
Helix 12
AB3
G
13 39Right-handed alpha
Helix 13
AB4
H
11 44Right-handed alpha
Helix 14
AB5
I
4 11Right-handed 310
Helix 15
AB6
I
13 39Right-handed alpha
Helix 16
AB7
J
11 44Right-handed alpha
Helix 17
AB8
K
2 11Right-handed 310
Helix 18
AB9
K
13 39Right-handed alpha
Helix 19
AC1
L
11 44Right-handed alpha
Helix 20
AC2
M
4 11Right-handed 310
Helix 21
AC3
M
13 39Right-handed alpha
Helix 22
AC4
N
11 44Right-handed alpha
Helix 23
AC5
O
4 11Right-handed 310
Helix 24
AC6
O
13 39Right-handed alpha
Helix 25
AC7
P
11 44Right-handed alpha
Helix 26
AC8
Q
4 11Right-handed 310
Helix 27
AC9
Q
13 39Right-handed alpha
Helix 28
AD1
R
11 44Right-handed alpha
Helix 29
AD2
S
2 11Right-handed 310
Helix 30
AD3
S
13 39Right-handed alpha
Helix 31
AD4
T
11 44Right-handed alpha
Helix 32
AD5
U
4 11Right-handed 310
Helix 33
AD6
U
13 39Right-handed alpha
Helix 34
AD7
V
11 44Right-handed alpha
Helix 35
AD8
W
4 11Right-handed 310
Helix 36
AD9
W
13 39Right-handed alpha
Helix 37
AE1
X
11 44Right-handed alpha
Helix 38
AE2
Y
4 11Right-handed 310
Helix 39
AE3
Y
13 39Right-handed alpha
Helix 40
AE4
Z
11 44Right-handed alpha
Helix 41
AE5
a
4 11Right-handed 310
Helix 42
AE6
a
13 39Right-handed alpha
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There are no sheets in PDB entry 8YPB
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il