Analysis of interatomic Contacts of Structural Units in PDB entry:
8YQ1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YQ1 entry

There are 2 chains in PDB entry 8YQ1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 69HIS 207
B
 HIS 66HIS 207
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 8YQ1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
106 109Right-handed 310
Helix 2
AA2
A
147 150Right-handed 310
Helix 3
AA3
A
188 192Right-handed 310
Helix 4
AA4
A
196 199Right-handed 310
Helix 5
AA5
B
106 109Right-handed 310
Helix 6
AA6
B
127 129Right-handed 310
Helix 7
AA7
B
147 150Right-handed 310
Helix 8
AA8
B
188 192Right-handed 310
Helix 9
AA9
B
196 199Right-handed 310
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There are 6 sheets in PDB entry 8YQ1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 143first strand
Strand 2
A
130 134anti-parallel
Strand 3
A
120 125anti-parallel
Strand 4
A
111 117anti-parallel
Strand 5
A
76 84anti-parallel
Strand 6
A
201 205anti-parallel
Strand 7
A
162 171anti-parallel
Strand 8
A
174 177anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 143first strand
Strand 2
A
130 134anti-parallel
Strand 3
A
120 125anti-parallel
Strand 4
A
152 156anti-parallel
Strand 5
A
162 171anti-parallel
Strand 6
A
174 177anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 92first strand
Strand 2
A
98 101anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 143first strand
Strand 2
B
130 134anti-parallel
Strand 3
B
120 125anti-parallel
Strand 4
B
111 117anti-parallel
Strand 5
B
78 84anti-parallel
Strand 6
B
201 205anti-parallel
Strand 7
B
162 171anti-parallel
Strand 8
B
174 177anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 143first strand
Strand 2
B
130 134anti-parallel
Strand 3
B
120 125anti-parallel
Strand 4
B
152 156anti-parallel
Strand 5
B
162 171anti-parallel
Strand 6
B
174 177anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 92first strand
Strand 2
B
98 101anti-parallel
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