Analysis of interatomic Contacts of Structural Units in PDB entry:
8YQ7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YQ7 entry

There are 6 chains in PDB entry 8YQ7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 126	LYS 355
B	ARG 114	LEU 357
C	VAL 116	LYS 355
D	MET 119	GLU 358
E	LEU 120	LYS 356
F	LEU 132	LYS 356

There are 65 helices in PDB entry 8YQ7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	138	148	Right-handed alpha
Helix 2	AA2	A	160	169	Right-handed alpha
Helix 3	AA3	A	191	213	Right-handed alpha
Helix 4	AA4	A	222	237	Right-handed alpha
Helix 5	AA5	A	239	241	Right-handed 310
Helix 6	AA6	A	242	257	Right-handed alpha
Helix 7	AA7	A	262	271	Right-handed alpha
Helix 8	AA8	A	272	274	Right-handed 310
Helix 9	AA9	A	279	285	Right-handed alpha
Helix 10	AB1	A	306	314	Right-handed alpha
Helix 11	AB2	A	337	355	Right-handed alpha
Helix 12	AB3	B	138	148	Right-handed alpha
Helix 13	AB4	B	160	168	Right-handed alpha
Helix 14	AB5	B	192	213	Right-handed alpha
Helix 15	AB6	B	222	237	Right-handed alpha
Helix 16	AB7	B	239	241	Right-handed 310
Helix 17	AB8	B	242	256	Right-handed alpha
Helix 18	AB9	B	262	271	Right-handed alpha
Helix 19	AC1	B	279	285	Right-handed alpha
Helix 20	AC2	B	306	315	Right-handed alpha
Helix 21	AC3	B	337	357	Right-handed alpha
Helix 22	AC4	C	138	148	Right-handed alpha
Helix 23	AC5	C	160	169	Right-handed alpha
Helix 24	AC6	C	191	213	Right-handed alpha
Helix 25	AC7	C	222	237	Right-handed alpha
Helix 26	AC8	C	239	241	Right-handed 310
Helix 27	AC9	C	242	257	Right-handed alpha
Helix 28	AD1	C	262	271	Right-handed alpha
Helix 29	AD2	C	272	274	Right-handed 310
Helix 30	AD3	C	279	285	Right-handed alpha
Helix 31	AD4	C	306	314	Right-handed alpha
Helix 32	AD5	C	337	355	Right-handed alpha
Helix 33	AD6	D	138	148	Right-handed alpha
Helix 34	AD7	D	160	169	Right-handed alpha
Helix 35	AD8	D	192	213	Right-handed alpha
Helix 36	AD9	D	222	237	Right-handed alpha
Helix 37	AE1	D	239	241	Right-handed 310
Helix 38	AE2	D	242	257	Right-handed alpha
Helix 39	AE3	D	262	271	Right-handed alpha
Helix 40	AE4	D	272	274	Right-handed 310
Helix 41	AE5	D	279	285	Right-handed alpha
Helix 42	AE6	D	306	315	Right-handed alpha
Helix 43	AE7	D	337	356	Right-handed alpha
Helix 44	AE8	E	138	148	Right-handed alpha
Helix 45	AE9	E	160	169	Right-handed alpha
Helix 46	AF1	E	191	213	Right-handed alpha
Helix 47	AF2	E	222	237	Right-handed alpha
Helix 48	AF3	E	239	241	Right-handed 310
Helix 49	AF4	E	242	257	Right-handed alpha
Helix 50	AF5	E	262	271	Right-handed alpha
Helix 51	AF6	E	272	274	Right-handed 310
Helix 52	AF7	E	279	285	Right-handed alpha
Helix 53	AF8	E	306	315	Right-handed alpha
Helix 54	AF9	E	337	356	Right-handed alpha
Helix 55	AG1	F	138	145	Right-handed alpha
Helix 56	AG2	F	160	169	Right-handed alpha
Helix 57	AG3	F	197	213	Right-handed alpha
Helix 58	AG4	F	222	236	Right-handed alpha
Helix 59	AG5	F	239	241	Right-handed 310
Helix 60	AG6	F	242	257	Right-handed alpha
Helix 61	AG7	F	262	271	Right-handed alpha
Helix 62	AG8	F	272	274	Right-handed 310
Helix 63	AG9	F	279	285	Right-handed alpha
Helix 64	AH1	F	306	315	Right-handed alpha
Helix 65	AH2	F	337	355	Right-handed alpha

There are 14 sheets in PDB entry 8YQ7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	132	first strand
Strand 2	A	183	186	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	326	first strand
Strand 2	A	332	335	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	129	first strand
Strand 2	B	186	187	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	133	first strand
Strand 2	B	182	183	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	153	first strand
Strand 2	B	190	191	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	323	326	first strand
Strand 2	B	332	335	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	133	first strand
Strand 2	C	182	186	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	323	326	first strand
Strand 2	C	332	335	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	133	first strand
Strand 2	D	182	183	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	153	first strand
Strand 2	D	190	191	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	323	326	first strand
Strand 2	D	332	335	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	121	122	first strand
Strand 2	E	182	186	parallel
Strand 3	E	129	133	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	323	326	first strand
Strand 2	E	332	335	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	323	326	first strand
Strand 2	F	332	335	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YQ7

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YQ7