Analysis of interatomic Contacts of Structural Units in PDB entry:
8YQJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YQJ entry

There are 2 chains in PDB entry 8YQJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 291
B
 MET 1GLY 291
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8YQJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 17Right-handed alpha
Helix 2
AA2
A
26 42Right-handed alpha
Helix 3
AA3
A
88 100Right-handed alpha
Helix 4
AA4
A
117 131Right-handed alpha
Helix 5
AA5
A
140 153Right-handed alpha
Helix 6
AA6
A
175 181Right-handed alpha
Helix 7
AA7
A
188 201Right-handed alpha
Helix 8
AA8
A
206 214Right-handed 310
Helix 9
AA9
A
233 247Right-handed alpha
Helix 10
AB1
A
262 267Right-handed 310
Helix 11
AB2
A
270 291Right-handed alpha
Helix 12
AB3
B
4 18Right-handed alpha
Helix 13
AB4
B
26 42Right-handed alpha
Helix 14
AB5
B
88 100Right-handed alpha
Helix 15
AB6
B
117 131Right-handed alpha
Helix 16
AB7
B
140 153Right-handed alpha
Helix 17
AB8
B
175 181Right-handed alpha
Helix 18
AB9
B
190 201Right-handed alpha
Helix 19
AC1
B
206 214Right-handed 310
Helix 20
AC2
B
233 247Right-handed alpha
Helix 21
AC3
B
262 267Right-handed 310
Helix 22
AC4
B
270 290Right-handed alpha
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There are 2 sheets in PDB entry 8YQJ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 56first strand
Strand 2
A
59 64anti-parallel
Strand 3
A
102 106anti-parallel
Strand 4
A
71 75parallel
Strand 5
A
134 139parallel
Strand 6
A
161 165parallel
Strand 7
A
223 230parallel
Strand 8
A
251 260parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 56first strand
Strand 2
B
59 64anti-parallel
Strand 3
B
102 106anti-parallel
Strand 4
B
71 75parallel
Strand 5
B
134 139parallel
Strand 6
B
162 165parallel
Strand 7
B
223 230parallel
Strand 8
B
251 260parallel
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