Analysis of interatomic Contacts of Structural Units in PDB entry:
8YQN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YQN entry

There are 7 chains in PDB entry 8YQN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	SER 434
B	ASN 2	CYS 500
C	SER 1	ALA 469
D	SER 1	SER 434
E	GLU 1	PRO 489
F	ARG 1	ASN 62
G	ARG 1	ASN 62

There are 55 helices in PDB entry 8YQN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	12	Right-handed alpha
Helix 2	AA2	A	68	73	Right-handed 310
Helix 3	AA3	A	81	85	Right-handed 310
Helix 4	AA4	A	212	232	Right-handed alpha
Helix 5	AA5	A	233	235	Right-handed 310
Helix 6	AA6	A	241	264	Right-handed alpha
Helix 7	AA7	A	272	300	Right-handed alpha
Helix 8	AA8	A	309	319	Right-handed alpha
Helix 9	AA9	A	319	324	Right-handed alpha
Helix 10	AB1	A	374	434	Right-handed alpha
Helix 11	AB2	B	3	13	Right-handed alpha
Helix 12	AB3	B	70	74	Right-handed 310
Helix 13	AB4	B	226	232	Right-handed alpha
Helix 14	AB5	B	232	241	Right-handed alpha
Helix 15	AB6	B	241	246	Right-handed alpha
Helix 16	AB7	B	250	254	Right-handed 310
Helix 17	AB8	B	255	275	Right-handed alpha
Helix 18	AB9	B	286	314	Right-handed alpha
Helix 19	AC1	B	323	330	Right-handed alpha
Helix 20	AC2	B	332	338	Right-handed alpha
Helix 21	AC3	B	417	478	Right-handed alpha
Helix 22	AC4	C	2	12	Right-handed alpha
Helix 23	AC5	C	68	73	Right-handed 310
Helix 24	AC6	C	81	85	Right-handed 310
Helix 25	AC7	C	176	180	Right-handed 310
Helix 26	AC8	C	217	238	Right-handed alpha
Helix 27	AC9	C	239	241	Right-handed 310
Helix 28	AD1	C	242	246	Right-handed 310
Helix 29	AD2	C	247	267	Right-handed alpha
Helix 30	AD3	C	278	306	Right-handed alpha
Helix 31	AD4	C	315	324	Right-handed alpha
Helix 32	AD5	C	325	331	Right-handed alpha
Helix 33	AD6	C	399	460	Right-handed alpha
Helix 34	AD7	D	2	12	Right-handed alpha
Helix 35	AD8	D	68	73	Right-handed 310
Helix 36	AD9	D	81	85	Right-handed 310
Helix 37	AE1	D	212	218	Right-handed alpha
Helix 38	AE2	D	218	232	Right-handed alpha
Helix 39	AE3	D	233	235	Right-handed 310
Helix 40	AE4	D	241	264	Right-handed alpha
Helix 41	AE5	D	272	300	Right-handed alpha
Helix 42	AE6	D	309	319	Right-handed alpha
Helix 43	AE7	D	319	324	Right-handed alpha
Helix 44	AE8	D	370	433	Right-handed alpha
Helix 45	AE9	E	3	13	Right-handed alpha
Helix 46	AF1	E	68	73	Right-handed 310
Helix 47	AF2	E	83	85	Right-handed 310
Helix 48	AF3	E	220	226	Right-handed alpha
Helix 49	AF4	E	226	235	Right-handed alpha
Helix 50	AF5	E	236	243	Right-handed 310
Helix 51	AF6	E	250	271	Right-handed alpha
Helix 52	AF7	E	281	309	Right-handed alpha
Helix 53	AF8	E	318	326	Right-handed alpha
Helix 54	AF9	E	328	333	Right-handed alpha
Helix 55	AG1	E	415	473	Right-handed alpha

There are 24 sheets in PDB entry 8YQN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	80	first strand
Strand 2	A	108	111	anti-parallel
Strand 3	A	115	118	anti-parallel
Strand 4	A	49	61	anti-parallel
Strand 5	A	121	127	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	80	first strand
Strand 2	A	108	111	anti-parallel
Strand 3	A	115	118	anti-parallel
Strand 4	A	49	61	anti-parallel
Strand 5	A	29	44	anti-parallel
Strand 6	A	156	160	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	92	first strand
Strand 2	A	139	148	anti-parallel
Strand 3	A	198	209	anti-parallel
Strand 4	A	176	188	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	82	first strand
Strand 2	B	110	112	anti-parallel
Strand 3	B	117	120	anti-parallel
Strand 4	B	51	63	anti-parallel
Strand 5	B	123	129	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	82	first strand
Strand 2	B	110	112	anti-parallel
Strand 3	B	117	120	anti-parallel
Strand 4	B	51	63	anti-parallel
Strand 5	B	31	46	anti-parallel
Strand 6	B	158	162	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	94	first strand
Strand 2	B	141	149	anti-parallel
Strand 3	B	213	223	anti-parallel
Strand 4	B	190	194	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	94	first strand
Strand 2	B	141	149	anti-parallel
Strand 3	B	213	223	anti-parallel
Strand 4	B	197	201	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	166	first strand
Strand 2	B	171	173	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	80	first strand
Strand 2	C	108	111	anti-parallel
Strand 3	C	115	118	anti-parallel
Strand 4	C	49	61	anti-parallel
Strand 5	C	121	127	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	80	first strand
Strand 2	C	108	111	anti-parallel
Strand 3	C	115	118	anti-parallel
Strand 4	C	49	61	anti-parallel
Strand 5	C	29	42	anti-parallel
Strand 6	C	156	160	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	92	first strand
Strand 2	C	139	148	anti-parallel
Strand 3	C	201	215	anti-parallel
Strand 4	C	186	190	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	92	first strand
Strand 2	C	139	148	anti-parallel
Strand 3	C	201	215	anti-parallel
Strand 4	C	193	198	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	80	first strand
Strand 2	D	108	111	anti-parallel
Strand 3	D	115	118	anti-parallel
Strand 4	D	49	61	anti-parallel
Strand 5	D	121	127	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	80	first strand
Strand 2	D	108	111	anti-parallel
Strand 3	D	115	118	anti-parallel
Strand 4	D	49	61	anti-parallel
Strand 5	D	29	44	anti-parallel
Strand 6	D	156	160	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	92	first strand
Strand 2	D	139	148	anti-parallel
Strand 3	D	198	209	anti-parallel
Strand 4	D	176	188	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	77	81	first strand
Strand 2	E	107	111	anti-parallel
Strand 3	E	113	118	anti-parallel
Strand 4	E	49	66	anti-parallel
Strand 5	E	121	127	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	77	81	first strand
Strand 2	E	107	111	anti-parallel
Strand 3	E	113	118	anti-parallel
Strand 4	E	49	66	anti-parallel
Strand 5	E	29	44	anti-parallel
Strand 6	E	156	160	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	90	92	first strand
Strand 2	E	139	148	anti-parallel
Strand 3	E	207	217	anti-parallel
Strand 4	E	184	188	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	90	92	first strand
Strand 2	E	139	148	anti-parallel
Strand 3	E	207	217	anti-parallel
Strand 4	E	191	195	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	162	163	first strand
Strand 2	E	166	167	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	4	first strand
Strand 2	F	14	16	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	41	first strand
Strand 2	F	24	30	anti-parallel
Strand 3	F	51	54	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2	4	first strand
Strand 2	G	14	16	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	35	40	first strand
Strand 2	G	25	30	anti-parallel
Strand 3	G	51	54	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YQN

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YQN