Analysis of interatomic Contacts of Structural Units in PDB entry:
8YQQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YQQ entry

There are 2 chains in PDB entry 8YQQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 323LEU 607
B
 PRO 129GLY 492
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8YQQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
328 334Right-handed alpha
Helix 2
AA2
A
340 344Right-handed 310
Helix 3
AA3
A
355 362Right-handed alpha
Helix 4
AA4
A
394 402Right-handed 310
Helix 5
AA5
A
407 413Right-handed alpha
Helix 6
AA6
A
430 434Right-handed 310
Helix 7
AA7
A
478 483Right-handed alpha
Helix 8
AA8
A
568 572Right-handed 310
Helix 9
AA9
B
142 147Right-handed alpha
Helix 10
AB1
B
177 187Right-handed alpha
Helix 11
AB2
B
406 411Right-handed alpha
Helix 12
AB3
B
480 491Right-handed alpha
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There are 12 sheets in PDB entry 8YQQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 338first strand
Strand 2
A
435 436parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 349first strand
Strand 2
A
386 388anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 371first strand
Strand 2
A
422 429anti-parallel
Strand 3
A
585 589anti-parallel
Strand 4
A
581 582anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 392first strand
Strand 2
A
585 589anti-parallel
Strand 3
A
422 429anti-parallel
Strand 4
A
591 593anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
459 463first strand
Strand 2
A
575 579anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
466 468first strand
Strand 2
A
536 538anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
507 509first strand
Strand 2
A
512 515anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 150first strand
Strand 2
B
159 162anti-parallel
Strand 3
B
167 170anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 200first strand
Strand 2
B
236 240anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 211first strand
Strand 2
B
226 228anti-parallel
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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
270 275first strand
Strand 2
B
278 285anti-parallel
Strand 3
B
290 293anti-parallel
Strand 4
B
347 351anti-parallel
Strand 5
B
325 333anti-parallel
Strand 6
B
308 312anti-parallel
Strand 7
B
270 275anti-parallel
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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
378 383first strand
Strand 2
B
398 405anti-parallel
Strand 3
B
424 427anti-parallel
Strand 4
B
472 476anti-parallel
Strand 5
B
452 462anti-parallel
Strand 6
B
444 449anti-parallel
Strand 7
B
378 383anti-parallel
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