Analysis of interatomic Contacts of Structural Units in PDB entry:
8YQV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YQV entry

There are 8 chains in PDB entry 8YQV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 2	SER 1442
E	SER 42	ASP 147
B	ILE 8	ALA 1242
C	LYS 3	ALA 359
D	MET 1	ILE 205
H	MET 1	TYR 80
G	GLY 47	GLY 105
F	MET 1	PHE 339

There are152 helices in PDB entry 8YQV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	25	Right-handed alpha
Helix 2	AA2	A	47	51	Right-handed 310
Helix 3	AA3	A	87	95	Right-handed alpha
Helix 4	AA4	A	116	127	Right-handed alpha
Helix 5	AA5	A	166	176	Right-handed alpha
Helix 6	AA6	A	178	184	Right-handed alpha
Helix 7	AA7	A	192	195	Right-handed 310
Helix 8	AA8	A	205	209	Right-handed 310
Helix 9	AA9	A	225	240	Right-handed alpha
Helix 10	AB1	A	253	273	Right-handed alpha
Helix 11	AB2	A	299	303	Right-handed 310
Helix 12	AB3	A	308	314	Right-handed alpha
Helix 13	AB4	A	342	346	Right-handed alpha
Helix 14	AB5	A	358	369	Right-handed alpha
Helix 15	AB6	A	450	455	Right-handed alpha
Helix 16	AB7	A	470	480	Right-handed alpha
Helix 17	AB8	A	482	487	Right-handed 310
Helix 18	AB9	A	502	512	Right-handed alpha
Helix 19	AC1	A	523	530	Right-handed alpha
Helix 20	AC2	A	552	561	Right-handed alpha
Helix 21	AC3	A	578	582	Right-handed 310
Helix 22	AC4	A	604	609	Right-handed alpha
Helix 23	AC5	A	615	625	Right-handed alpha
Helix 24	AC6	A	625	648	Right-handed alpha
Helix 25	AC7	A	652	657	Right-handed 310
Helix 26	AC8	A	659	686	Right-handed alpha
Helix 27	AC9	A	696	709	Right-handed alpha
Helix 28	AD1	A	712	714	Right-handed 310
Helix 29	AD2	A	715	723	Right-handed alpha
Helix 30	AD3	A	728	736	Right-handed alpha
Helix 31	AD4	A	741	750	Right-handed alpha
Helix 32	AD5	A	781	785	Right-handed 310
Helix 33	AD6	A	797	834	Right-handed alpha
Helix 34	AD7	A	854	858	Right-handed 310
Helix 35	AD8	A	861	865	Right-handed 310
Helix 36	AD9	A	876	885	Right-handed alpha
Helix 37	AE1	A	891	918	Right-handed alpha
Helix 38	AE2	A	933	944	Right-handed alpha
Helix 39	AE3	A	953	970	Right-handed alpha
Helix 40	AE4	A	971	976	Right-handed 310
Helix 41	AE5	A	977	984	Right-handed alpha
Helix 42	AE6	A	988	995	Right-handed alpha
Helix 43	AE7	A	995	1006	Right-handed alpha
Helix 44	AE8	A	1015	1032	Right-handed alpha
Helix 45	AE9	A	1040	1051	Right-handed alpha
Helix 46	AF1	A	1074	1081	Right-handed alpha
Helix 47	AF2	A	1085	1089	Right-handed 310
Helix 48	AF3	A	1106	1117	Right-handed alpha
Helix 49	AF4	A	1148	1162	Right-handed alpha
Helix 50	AF5	A	1181	1188	Right-handed alpha
Helix 51	AF6	A	1191	1200	Right-handed alpha
Helix 52	AF7	A	1229	1232	Right-handed 310
Helix 53	AF8	A	1243	1256	Right-handed alpha
Helix 54	AF9	A	1299	1305	Right-handed alpha
Helix 55	AG1	A	1310	1314	Right-handed 310
Helix 56	AG2	A	1318	1327	Right-handed alpha
Helix 57	AG3	A	1327	1344	Right-handed alpha
Helix 58	AG4	A	1350	1361	Right-handed alpha
Helix 59	AG5	A	1370	1378	Right-handed alpha
Helix 60	AG6	A	1381	1389	Right-handed alpha
Helix 61	AG7	A	1390	1401	Right-handed alpha
Helix 62	AG8	A	1410	1416	Right-handed alpha
Helix 63	AG9	A	1422	1426	Right-handed 310
Helix 64	AH1	A	1432	1437	Right-handed alpha
Helix 65	AH2	E	44	49	Right-handed alpha
Helix 66	AH3	E	61	65	Right-handed 310
Helix 67	AH4	E	72	90	Right-handed alpha
Helix 68	AH5	E	101	112	Right-handed alpha
Helix 69	AH6	E	137	141	Right-handed 310
Helix 70	AH7	B	12	16	Right-handed 310
Helix 71	AH8	B	26	38	Right-handed alpha
Helix 72	AH9	B	41	53	Right-handed alpha
Helix 73	AI1	B	54	61	Right-handed alpha
Helix 74	AI2	B	78	80	Right-handed 310
Helix 75	AI3	B	113	121	Right-handed alpha
Helix 76	AI4	B	175	183	Right-handed alpha
Helix 77	AI5	B	273	279	Right-handed alpha
Helix 78	AI6	B	283	289	Right-handed alpha
Helix 79	AI7	B	299	313	Right-handed alpha
Helix 80	AI8	B	329	341	Right-handed alpha
Helix 81	AI9	B	349	353	Right-handed 310
Helix 82	AJ1	B	354	372	Right-handed alpha
Helix 83	AJ2	B	373	377	Right-handed 310
Helix 84	AJ3	B	379	381	Right-handed 310
Helix 85	AJ4	B	382	402	Right-handed alpha
Helix 86	AJ5	B	412	414	Right-handed 310
Helix 87	AJ6	B	420	432	Right-handed alpha
Helix 88	AJ7	B	432	437	Right-handed alpha
Helix 89	AJ8	B	437	450	Right-handed alpha
Helix 90	AJ9	B	458	470	Right-handed alpha
Helix 91	AK1	B	471	489	Right-handed alpha
Helix 92	AK2	B	513	521	Right-handed alpha
Helix 93	AK3	B	538	542	Right-handed alpha
Helix 94	AK4	B	561	565	Right-handed 310
Helix 95	AK5	B	582	591	Right-handed alpha
Helix 96	AK6	B	598	602	Right-handed 310
Helix 97	AK7	B	603	610	Right-handed alpha
Helix 98	AK8	B	627	642	Right-handed alpha
Helix 99	AK9	B	679	697	Right-handed alpha
Helix 100	AL1	B	700	705	Right-handed 310
Helix 101	AL2	B	715	724	Right-handed alpha
Helix 102	AL3	B	728	735	Right-handed alpha
Helix 103	AL4	B	744	749	Right-handed 310
Helix 104	AL5	B	754	761	Right-handed alpha
Helix 105	AL6	B	774	779	Right-handed 310
Helix 106	AL7	B	788	792	Right-handed 310
Helix 107	AL8	B	793	805	Right-handed alpha
Helix 108	AL9	B	814	818	Right-handed 310
Helix 109	AM1	B	836	841	Right-handed 310
Helix 110	AM2	B	869	874	Right-handed alpha
Helix 111	AM3	B	1011	1015	Right-handed 310
Helix 112	AM4	B	1030	1033	Right-handed 310
Helix 113	AM5	B	1038	1055	Right-handed alpha
Helix 114	AM6	B	1067	1078	Right-handed alpha
Helix 115	AM7	B	1114	1119	Right-handed alpha
Helix 116	AM8	B	1148	1158	Right-handed alpha
Helix 117	AM9	B	1160	1169	Right-handed alpha
Helix 118	AN1	B	1214	1225	Right-handed alpha
Helix 119	AN2	C	19	31	Right-handed alpha
Helix 120	AN3	C	51	65	Right-handed alpha
Helix 121	AN4	C	89	99	Right-handed alpha
Helix 122	AN5	C	173	177	Right-handed 310
Helix 123	AN6	C	230	258	Right-handed alpha
Helix 124	AN7	C	287	302	Right-handed alpha
Helix 125	AN8	C	328	358	Right-handed alpha
Helix 126	AN9	D	2	17	Right-handed alpha
Helix 127	AO1	D	27	39	Right-handed alpha
Helix 128	AO2	D	62	67	Right-handed alpha
Helix 129	AO3	D	67	80	Right-handed alpha
Helix 130	AO4	D	93	98	Right-handed 310
Helix 131	AO5	D	99	113	Right-handed alpha
Helix 132	AO6	D	123	127	Right-handed 310
Helix 133	AO7	D	129	133	Right-handed 310
Helix 134	AO8	D	143	155	Right-handed alpha
Helix 135	AO9	D	157	161	Right-handed 310
Helix 136	AP1	D	168	175	Right-handed alpha
Helix 137	AP2	H	14	16	Right-handed 310
Helix 138	AP3	H	17	34	Right-handed alpha
Helix 139	AP4	H	42	47	Right-handed alpha
Helix 140	AP5	H	51	58	Right-handed alpha
Helix 141	AP6	H	63	73	Right-handed alpha
Helix 142	AP7	H	75	79	Right-handed 310
Helix 143	AP8	G	53	60	Right-handed alpha
Helix 144	AP9	G	61	63	Right-handed 310
Helix 145	AQ1	F	15	20	Right-handed alpha
Helix 146	AQ2	F	22	36	Right-handed alpha
Helix 147	AQ3	F	171	193	Right-handed alpha
Helix 148	AQ4	F	196	208	Right-handed alpha
Helix 149	AQ5	F	239	248	Right-handed alpha
Helix 150	AQ6	F	288	314	Right-handed alpha
Helix 151	AQ7	F	316	323	Right-handed alpha
Helix 152	AQ8	F	323	332	Right-handed alpha

There are 44 sheets in PDB entry 8YQV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	5	first strand
Strand 2	B	1207	1213	parallel
Strand 3	B	1174	1180	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1404	1406	first strand
Strand 2	A	8	15	anti-parallel
Strand 3	B	1228	1234	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	83	first strand
Strand 2	A	197	203	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	146	first strand
Strand 2	A	154	158	anti-parallel
Strand 3	A	161	165	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	319	first strand
Strand 2	B	1145	1146	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1120	1121	first strand
Strand 2	A	323	329	anti-parallel
Strand 3	A	462	466	anti-parallel
Strand 4	A	414	418	anti-parallel
Strand 5	A	428	436	anti-parallel
Strand 6	A	337	341	parallel
Strand 7	A	444	446	anti-parallel
Strand 8	A	323	329	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	353	first strand
Strand 2	A	404	407	anti-parallel
Strand 3	A	376	381	anti-parallel
Strand 4	A	386	389	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	514	515	first strand
Strand 2	A	518	519	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	521	522	first strand
Strand 2	A	550	551	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	567	569	first strand
Strand 2	A	591	594	anti-parallel
Strand 3	A	597	600	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	753	754	first strand
Strand 2	A	787	788	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	837	838	first strand
Strand 2	A	844	846	anti-parallel
Strand 3	A	849	852	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	866	869	first strand
Strand 2	A	927	930	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1268	1278	first strand
Strand 2	A	1284	1296	anti-parallel
Strand 3	A	1093	1096	anti-parallel
Strand 4	A	1315	1316	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1120	1121	first strand
Strand 2	A	1258	1260	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1126	1130	first strand
Strand 2	A	1176	1180	anti-parallel
Strand 3	A	1222	1227	anti-parallel
Strand 4	A	1206	1207	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1428	1431	first strand
Strand 2	E	117	125	anti-parallel
Strand 3	E	130	136	anti-parallel
Strand 4	E	55	59	parallel
Strand 5	B	1238	1239	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	70	first strand
Strand 2	B	82	96	anti-parallel
Strand 3	B	125	140	anti-parallel
Strand 4	B	145	161	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	101	first strand
Strand 2	B	110	111	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	195	first strand
Strand 2	B	198	202	anti-parallel
Strand 3	B	506	508	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	416	418	first strand
Strand 2	B	204	208	anti-parallel
Strand 3	B	523	525	parallel
Strand 4	B	568	570	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	216	first strand
Strand 2	B	226	234	anti-parallel
Strand 3	B	244	251	anti-parallel
Strand 4	B	256	261	anti-parallel
Strand 5	B	269	271	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	576	577	first strand
Strand 2	B	669	678	anti-parallel
Strand 3	B	738	741	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	710	712	first strand
Strand 2	B	669	678	anti-parallel
Strand 3	B	771	772	anti-parallel
Strand 4	B	751	752	parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	596	597	first strand
Strand 2	B	620	625	anti-parallel
Strand 3	B	613	617	anti-parallel
Strand 4	B	659	663	parallel
Strand 5	B	650	654	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	823	826	first strand
Strand 2	B	879	887	anti-parallel
Strand 3	B	980	988	anti-parallel
Strand 4	B	963	969	anti-parallel
Strand 5	B	926	927	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	834	835	first strand
Strand 2	B	1058	1059	parallel

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There are 8 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1085	1086	first strand
Strand 2	B	1101	1110	anti-parallel
Strand 3	B	995	998	anti-parallel
Strand 4	B	1003	1010	anti-parallel
Strand 5	B	864	868	parallel
Strand 6	B	1026	1028	anti-parallel
Strand 7	B	847	853	parallel
Strand 8	B	1101	1110	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	894	895	first strand
Strand 2	B	937	938	anti-parallel
Strand 3	B	950	952	anti-parallel
Strand 4	B	904	905	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	932	934	first strand
Strand 2	B	955	956	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1017	1018	first strand
Strand 2	B	1088	1089	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1188	1190	first strand
Strand 2	B	1195	1197	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	12	first strand
Strand 2	C	38	48	anti-parallel
Strand 3	C	216	227	anti-parallel
Strand 4	C	180	186	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	73	first strand
Strand 2	C	157	168	anti-parallel
Strand 3	C	110	116	anti-parallel
Strand 4	C	130	134	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	126	first strand
Strand 2	C	148	152	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	270	first strand
Strand 2	C	277	284	anti-parallel
Strand 3	C	318	325	anti-parallel
Strand 4	C	307	311	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	21	first strand
Strand 2	D	40	46	anti-parallel
Strand 3	D	52	58	anti-parallel
Strand 4	D	85	91	parallel
Strand 5	D	117	121	parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	138	142	first strand
Strand 2	D	181	186	anti-parallel
Strand 3	D	194	201	anti-parallel
Strand 4	D	162	165	parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	67	69	first strand
Strand 2	G	81	86	anti-parallel
Strand 3	G	91	95	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	13	first strand
Strand 2	F	68	78	anti-parallel
Strand 3	F	45	54	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	13	first strand
Strand 2	F	68	78	anti-parallel
Strand 3	F	58	59	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	86	87	first strand
Strand 2	F	132	133	anti-parallel
Strand 3	F	153	154	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	90	95	first strand
Strand 2	F	99	104	anti-parallel
Strand 3	F	110	115	anti-parallel
Strand 4	F	148	150	parallel

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There are 5 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	237	238	first strand
Strand 2	F	269	273	anti-parallel
Strand 3	F	255	258	anti-parallel
Strand 4	F	163	166	anti-parallel
Strand 5	F	285	287	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YQV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YQV