Analysis of interatomic Contacts of Structural Units in PDB entry:
8YR0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YR0 entry

There are 3 chains in PDB entry 8YR0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 2	SER 1039
B	ASN 2	SER 1039
C	ASN 2	SER 1039

There are127 helices in PDB entry 8YR0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	9	Right-handed alpha
Helix 2	AA2	A	10	30	Right-handed alpha
Helix 3	AA3	A	55	63	Right-handed alpha
Helix 4	AA4	A	63	72	Right-handed alpha
Helix 5	AA5	A	101	114	Right-handed alpha
Helix 6	AA6	A	115	120	Right-handed 310
Helix 7	AA7	A	121	128	Right-handed alpha
Helix 8	AA8	A	152	170	Right-handed alpha
Helix 9	AA9	A	192	199	Right-handed alpha
Helix 10	AB1	A	202	213	Right-handed alpha
Helix 11	AB2	A	243	249	Right-handed alpha
Helix 12	AB3	A	300	315	Right-handed alpha
Helix 13	AB4	A	316	318	Right-handed 310
Helix 14	AB5	A	331	361	Right-handed alpha
Helix 15	AB6	A	363	365	Right-handed 310
Helix 16	AB7	A	366	387	Right-handed alpha
Helix 17	AB8	A	392	424	Right-handed alpha
Helix 18	AB9	A	426	437	Right-handed alpha
Helix 19	AC1	A	438	454	Right-handed alpha
Helix 20	AC2	A	455	458	Right-handed 310
Helix 21	AC3	A	461	497	Right-handed alpha
Helix 22	AC4	A	505	515	Right-handed alpha
Helix 23	AC5	A	517	541	Right-handed alpha
Helix 24	AC6	A	543	565	Right-handed alpha
Helix 25	AC7	A	589	605	Right-handed alpha
Helix 26	AC8	A	645	648	Right-handed 310
Helix 27	AC9	A	649	662	Right-handed alpha
Helix 28	AD1	A	697	714	Right-handed alpha
Helix 29	AD2	A	747	759	Right-handed alpha
Helix 30	AD3	A	782	786	Right-handed 310
Helix 31	AD4	A	787	793	Right-handed 310
Helix 32	AD5	A	842	857	Right-handed alpha
Helix 33	AD6	A	868	876	Right-handed alpha
Helix 34	AD7	A	881	899	Right-handed alpha
Helix 35	AD8	A	902	909	Right-handed alpha
Helix 36	AD9	A	911	925	Right-handed alpha
Helix 37	AE1	A	930	962	Right-handed alpha
Helix 38	AE2	A	964	976	Right-handed alpha
Helix 39	AE3	A	976	991	Right-handed alpha
Helix 40	AE4	A	991	996	Right-handed alpha
Helix 41	AE5	A	1001	1039	Right-handed alpha
Helix 42	AE6	B	3	9	Right-handed alpha
Helix 43	AE7	B	10	29	Right-handed alpha
Helix 44	AE8	B	30	32	Right-handed 310
Helix 45	AE9	B	55	62	Right-handed alpha
Helix 46	AF1	B	63	72	Right-handed alpha
Helix 47	AF2	B	101	114	Right-handed alpha
Helix 48	AF3	B	115	120	Right-handed 310
Helix 49	AF4	B	121	127	Right-handed alpha
Helix 50	AF5	B	152	170	Right-handed alpha
Helix 51	AF6	B	192	199	Right-handed alpha
Helix 52	AF7	B	202	213	Right-handed alpha
Helix 53	AF8	B	243	249	Right-handed alpha
Helix 54	AF9	B	299	315	Right-handed alpha
Helix 55	AG1	B	316	318	Right-handed 310
Helix 56	AG2	B	331	360	Right-handed alpha
Helix 57	AG3	B	363	366	Right-handed 310
Helix 58	AG4	B	367	388	Right-handed alpha
Helix 59	AG5	B	392	425	Right-handed alpha
Helix 60	AG6	B	426	437	Right-handed alpha
Helix 61	AG7	B	438	454	Right-handed alpha
Helix 62	AG8	B	455	458	Right-handed 310
Helix 63	AG9	B	461	497	Right-handed alpha
Helix 64	AH1	B	505	543	Right-handed alpha
Helix 65	AH2	B	544	562	Right-handed alpha
Helix 66	AH3	B	589	606	Right-handed alpha
Helix 67	AH4	B	645	648	Right-handed 310
Helix 68	AH5	B	649	662	Right-handed alpha
Helix 69	AH6	B	697	714	Right-handed alpha
Helix 70	AH7	B	747	759	Right-handed alpha
Helix 71	AH8	B	782	786	Right-handed 310
Helix 72	AH9	B	787	793	Right-handed 310
Helix 73	AI1	B	841	857	Right-handed alpha
Helix 74	AI2	B	866	875	Right-handed alpha
Helix 75	AI3	B	878	880	Right-handed 310
Helix 76	AI4	B	881	898	Right-handed alpha
Helix 77	AI5	B	902	909	Right-handed alpha
Helix 78	AI6	B	911	925	Right-handed alpha
Helix 79	AI7	B	930	935	Right-handed alpha
Helix 80	AI8	B	936	962	Right-handed alpha
Helix 81	AI9	B	964	976	Right-handed alpha
Helix 82	AJ1	B	976	991	Right-handed alpha
Helix 83	AJ2	B	991	996	Right-handed alpha
Helix 84	AJ3	B	1001	1026	Right-handed alpha
Helix 85	AJ4	B	1026	1039	Right-handed alpha
Helix 86	AJ5	C	3	9	Right-handed alpha
Helix 87	AJ6	C	10	30	Right-handed alpha
Helix 88	AJ7	C	55	63	Right-handed alpha
Helix 89	AJ8	C	63	72	Right-handed alpha
Helix 90	AJ9	C	101	117	Right-handed alpha
Helix 91	AK1	C	118	120	Right-handed 310
Helix 92	AK2	C	121	128	Right-handed alpha
Helix 93	AK3	C	152	164	Right-handed alpha
Helix 94	AK4	C	164	170	Right-handed alpha
Helix 95	AK5	C	192	199	Right-handed alpha
Helix 96	AK6	C	202	213	Right-handed alpha
Helix 97	AK7	C	243	249	Right-handed alpha
Helix 98	AK8	C	299	316	Right-handed alpha
Helix 99	AK9	C	331	361	Right-handed alpha
Helix 100	AL1	C	366	371	Right-handed alpha
Helix 101	AL2	C	372	388	Right-handed alpha
Helix 102	AL3	C	392	424	Right-handed alpha
Helix 103	AL4	C	426	437	Right-handed alpha
Helix 104	AL5	C	438	454	Right-handed alpha
Helix 105	AL6	C	455	458	Right-handed 310
Helix 106	AL7	C	461	497	Right-handed alpha
Helix 107	AL8	C	505	515	Right-handed alpha
Helix 108	AL9	C	517	543	Right-handed alpha
Helix 109	AM1	C	544	562	Right-handed alpha
Helix 110	AM2	C	589	606	Right-handed alpha
Helix 111	AM3	C	645	648	Right-handed 310
Helix 112	AM4	C	649	662	Right-handed alpha
Helix 113	AM5	C	697	715	Right-handed alpha
Helix 114	AM6	C	747	760	Right-handed alpha
Helix 115	AM7	C	782	786	Right-handed 310
Helix 116	AM8	C	787	793	Right-handed 310
Helix 117	AM9	C	841	857	Right-handed alpha
Helix 118	AN1	C	866	876	Right-handed alpha
Helix 119	AN2	C	878	880	Right-handed 310
Helix 120	AN3	C	881	899	Right-handed alpha
Helix 121	AN4	C	904	909	Right-handed alpha
Helix 122	AN5	C	911	924	Right-handed alpha
Helix 123	AN6	C	930	961	Right-handed alpha
Helix 124	AN7	C	964	975	Right-handed alpha
Helix 125	AN8	C	976	991	Right-handed alpha
Helix 126	AN9	C	991	996	Right-handed alpha
Helix 127	AO1	C	1001	1039	Right-handed alpha

There are 23 sheets in PDB entry 8YR0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	133	first strand
Strand 2	A	44	50	anti-parallel
Strand 3	A	89	96	anti-parallel
Strand 4	A	77	85	anti-parallel
Strand 5	A	821	824	anti-parallel
Strand 6	A	827	834	anti-parallel
Strand 7	A	722	723	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	133	first strand
Strand 2	A	44	50	anti-parallel
Strand 3	A	89	96	anti-parallel
Strand 4	A	77	85	anti-parallel
Strand 5	A	821	824	anti-parallel
Strand 6	A	827	834	anti-parallel
Strand 7	A	686	692	anti-parallel
Strand 8	A	861	865	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	177	first strand
Strand 2	A	285	294	anti-parallel
Strand 3	A	138	145	anti-parallel
Strand 4	A	323	328	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	177	first strand
Strand 2	A	285	294	anti-parallel
Strand 3	A	281	282	anti-parallel
Strand 4	A	610	619	anti-parallel
Strand 5	A	626	637	anti-parallel
Strand 6	A	578	583	anti-parallel
Strand 7	A	668	672	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	273	first strand
Strand 2	A	185	191	anti-parallel
Strand 3	A	772	780	parallel
Strand 4	A	762	769	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	236	first strand
Strand 2	B	729	736	parallel
Strand 3	B	810	817	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	253	first strand
Strand 2	A	261	262	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	810	817	first strand
Strand 2	A	729	736	anti-parallel
Strand 3	C	235	236	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	795	797	first strand
Strand 2	A	803	805	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	133	first strand
Strand 2	B	44	50	anti-parallel
Strand 3	B	89	96	anti-parallel
Strand 4	B	77	84	anti-parallel
Strand 5	B	821	824	anti-parallel
Strand 6	B	827	834	anti-parallel
Strand 7	B	722	723	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	133	first strand
Strand 2	B	44	50	anti-parallel
Strand 3	B	89	96	anti-parallel
Strand 4	B	77	84	anti-parallel
Strand 5	B	821	824	anti-parallel
Strand 6	B	827	834	anti-parallel
Strand 7	B	686	692	anti-parallel
Strand 8	B	861	865	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	323	328	first strand
Strand 2	B	138	145	anti-parallel
Strand 3	B	285	293	anti-parallel
Strand 4	B	281	282	anti-parallel
Strand 5	B	610	619	anti-parallel
Strand 6	B	626	637	anti-parallel
Strand 7	B	577	583	anti-parallel
Strand 8	B	668	672	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	267	273	first strand
Strand 2	B	185	191	anti-parallel
Strand 3	B	772	780	parallel
Strand 4	B	762	769	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	222	first strand
Strand 2	B	233	236	anti-parallel
Strand 3	C	729	736	parallel
Strand 4	C	810	817	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	251	253	first strand
Strand 2	B	261	262	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	795	797	first strand
Strand 2	B	803	805	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	133	first strand
Strand 2	C	44	50	anti-parallel
Strand 3	C	89	96	anti-parallel
Strand 4	C	77	84	anti-parallel
Strand 5	C	821	824	anti-parallel
Strand 6	C	827	834	anti-parallel
Strand 7	C	721	723	anti-parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	133	first strand
Strand 2	C	44	50	anti-parallel
Strand 3	C	89	96	anti-parallel
Strand 4	C	77	84	anti-parallel
Strand 5	C	821	824	anti-parallel
Strand 6	C	827	834	anti-parallel
Strand 7	C	686	692	anti-parallel
Strand 8	C	861	865	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	174	177	first strand
Strand 2	C	292	294	anti-parallel
Strand 3	C	138	145	anti-parallel
Strand 4	C	323	328	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	273	first strand
Strand 2	C	185	191	anti-parallel
Strand 3	C	772	780	parallel
Strand 4	C	762	769	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	251	253	first strand
Strand 2	C	261	262	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	281	282	first strand
Strand 2	C	610	619	anti-parallel
Strand 3	C	626	637	anti-parallel
Strand 4	C	577	583	anti-parallel
Strand 5	C	668	672	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	795	796	first strand
Strand 2	C	804	805	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YR0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YR0