Analysis of interatomic Contacts of Structural Units in PDB entry:
8YR3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YR3 entry

There are 2 chains in PDB entry 8YR3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 240GLN 826
B
 ARG 240GLN 826
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 8YR3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
241 254Right-handed alpha
Helix 2
AA2
A
261 295Right-handed alpha
Helix 3
AA3
A
298 316Right-handed alpha
Helix 4
AA4
A
324 355Right-handed alpha
Helix 5
AA5
A
357 364Right-handed alpha
Helix 6
AA6
A
365 391Right-handed alpha
Helix 7
AA7
A
391 409Right-handed alpha
Helix 8
AA8
A
412 455Right-handed alpha
Helix 9
AA9
A
461 466Right-handed alpha
Helix 10
AB1
A
468 522Right-handed alpha
Helix 11
AB2
A
527 570Right-handed alpha
Helix 12
AB3
A
627 636Right-handed alpha
Helix 13
AB4
A
655 657Right-handed 310
Helix 14
AB5
A
658 665Right-handed alpha
Helix 15
AB6
A
679 686Right-handed alpha
Helix 16
AB7
A
692 703Right-handed alpha
Helix 17
AB8
A
705 712Right-handed alpha
Helix 18
AB9
A
714 718Right-handed 310
Helix 19
AC1
A
728 744Right-handed alpha
Helix 20
AC2
A
758 774Right-handed alpha
Helix 21
AC3
A
785 790Right-handed alpha
Helix 22
AC4
A
807 815Right-handed alpha
Helix 23
AC5
A
817 826Right-handed alpha
Helix 24
AC6
B
241 254Right-handed alpha
Helix 25
AC7
B
261 295Right-handed alpha
Helix 26
AC8
B
298 316Right-handed alpha
Helix 27
AC9
B
324 355Right-handed alpha
Helix 28
AD1
B
357 364Right-handed alpha
Helix 29
AD2
B
365 391Right-handed alpha
Helix 30
AD3
B
391 409Right-handed alpha
Helix 31
AD4
B
411 455Right-handed alpha
Helix 32
AD5
B
461 466Right-handed alpha
Helix 33
AD6
B
468 522Right-handed alpha
Helix 34
AD7
B
526 542Right-handed alpha
Helix 35
AD8
B
543 545Right-handed 310
Helix 36
AD9
B
546 570Right-handed alpha
Helix 37
AE1
B
627 636Right-handed alpha
Helix 38
AE2
B
655 657Right-handed 310
Helix 39
AE3
B
658 665Right-handed alpha
Helix 40
AE4
B
679 686Right-handed alpha
Helix 41
AE5
B
692 703Right-handed alpha
Helix 42
AE6
B
705 712Right-handed alpha
Helix 43
AE7
B
714 718Right-handed 310
Helix 44
AE8
B
728 744Right-handed alpha
Helix 45
AE9
B
758 774Right-handed alpha
Helix 46
AF1
B
785 790Right-handed alpha
Helix 47
AF2
B
807 815Right-handed alpha
Helix 48
AF3
B
817 826Right-handed alpha
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There are 5 sheets in PDB entry 8YR3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
606 609first strand
Strand 2
A
590 597anti-parallel
Strand 3
A
612 613anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
606 609first strand
Strand 2
A
590 597anti-parallel
Strand 3
A
644 649anti-parallel
Strand 4
A
652 653anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
666 667first strand
Strand 2
A
747 748parallel
Strand 3
A
777 781parallel
Strand 4
A
618 622parallel
Strand 5
A
794 796parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
606 609first strand
Strand 2
B
590 597anti-parallel
Strand 3
B
644 649anti-parallel
Strand 4
B
652 653anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
666 667first strand
Strand 2
B
747 748parallel
Strand 3
B
777 781parallel
Strand 4
B
618 622parallel
Strand 5
B
794 796parallel
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