Analysis of interatomic Contacts of Structural Units in PDB entry:
8YR4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YR4 entry

There are 4 chains in PDB entry 8YR4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 241GLN 826
B
 ASP 241GLN 826
C
 CYS 102GLY 105
D
 CYS 102GLY 105
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 8YR4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
241 254Right-handed alpha
Helix 2
AA2
A
258 295Right-handed alpha
Helix 3
AA3
A
298 316Right-handed alpha
Helix 4
AA4
A
327 354Right-handed alpha
Helix 5
AA5
A
357 364Right-handed alpha
Helix 6
AA6
A
365 391Right-handed alpha
Helix 7
AA7
A
391 409Right-handed alpha
Helix 8
AA8
A
411 459Right-handed alpha
Helix 9
AA9
A
461 466Right-handed alpha
Helix 10
AB1
A
468 522Right-handed alpha
Helix 11
AB2
A
526 545Right-handed alpha
Helix 12
AB3
A
546 569Right-handed alpha
Helix 13
AB4
A
627 637Right-handed alpha
Helix 14
AB5
A
658 665Right-handed alpha
Helix 15
AB6
A
680 686Right-handed alpha
Helix 16
AB7
A
692 703Right-handed alpha
Helix 17
AB8
A
705 712Right-handed alpha
Helix 18
AB9
A
728 744Right-handed alpha
Helix 19
AC1
A
758 774Right-handed alpha
Helix 20
AC2
A
784 791Right-handed alpha
Helix 21
AC3
A
807 814Right-handed alpha
Helix 22
AC4
A
816 825Right-handed alpha
Helix 23
AC5
B
242 254Right-handed alpha
Helix 24
AC6
B
258 295Right-handed alpha
Helix 25
AC7
B
298 316Right-handed alpha
Helix 26
AC8
B
327 354Right-handed alpha
Helix 27
AC9
B
357 364Right-handed alpha
Helix 28
AD1
B
365 391Right-handed alpha
Helix 29
AD2
B
391 409Right-handed alpha
Helix 30
AD3
B
411 459Right-handed alpha
Helix 31
AD4
B
461 466Right-handed alpha
Helix 32
AD5
B
468 522Right-handed alpha
Helix 33
AD6
B
526 545Right-handed alpha
Helix 34
AD7
B
546 569Right-handed alpha
Helix 35
AD8
B
627 637Right-handed alpha
Helix 36
AD9
B
658 665Right-handed alpha
Helix 37
AE1
B
680 686Right-handed alpha
Helix 38
AE2
B
692 703Right-handed alpha
Helix 39
AE3
B
705 712Right-handed alpha
Helix 40
AE4
B
728 744Right-handed alpha
Helix 41
AE5
B
758 774Right-handed alpha
Helix 42
AE6
B
784 791Right-handed alpha
Helix 43
AE7
B
807 814Right-handed alpha
Helix 44
AE8
B
816 825Right-handed alpha
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There are 6 sheets in PDB entry 8YR4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
612 613first strand
Strand 2
A
590 596anti-parallel
Strand 3
A
644 649anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
666 669first strand
Strand 2
A
747 750parallel
Strand 3
A
777 781parallel
Strand 4
A
618 622parallel
Strand 5
A
793 797parallel
Strand 6
A
802 806anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
678 679first strand
Strand 2
A
719 720anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
612 613first strand
Strand 2
B
590 596anti-parallel
Strand 3
B
644 649anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
666 669first strand
Strand 2
B
747 750parallel
Strand 3
B
777 781parallel
Strand 4
B
618 622parallel
Strand 5
B
793 797parallel
Strand 6
B
802 806anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
678 679first strand
Strand 2
B
719 720anti-parallel
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