Analysis of interatomic Contacts of Structural Units in PDB entry:
8YR9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YR9 entry

There are 2 chains in PDB entry 8YR9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 8ASP 725
B
 GLN 8ASP 725
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 8YR9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 25Right-handed alpha
Helix 2
AA2
A
35 44Right-handed alpha
Helix 3
AA3
A
46 58Right-handed alpha
Helix 4
AA4
A
59 64Right-handed alpha
Helix 5
AA5
A
72 98Right-handed alpha
Helix 6
AA6
A
102 120Right-handed alpha
Helix 7
AA7
A
130 146Right-handed alpha
Helix 8
AA8
A
169 196Right-handed alpha
Helix 9
AA9
A
200 205Right-handed 310
Helix 10
AB1
A
206 225Right-handed alpha
Helix 11
AB2
A
225 230Right-handed alpha
Helix 12
AB3
A
242 252Right-handed alpha
Helix 13
AB4
A
253 257Right-handed 310
Helix 14
AB5
A
258 282Right-handed alpha
Helix 15
AB6
A
291 308Right-handed alpha
Helix 16
AB7
A
332 339Right-handed alpha
Helix 17
AB8
A
339 366Right-handed alpha
Helix 18
AB9
A
370 388Right-handed alpha
Helix 19
AC1
A
396 407Right-handed alpha
Helix 20
AC2
A
411 427Right-handed alpha
Helix 21
AC3
A
438 447Right-handed alpha
Helix 22
AC4
A
447 453Right-handed alpha
Helix 23
AC5
A
454 456Right-handed 310
Helix 24
AC6
A
457 465Right-handed alpha
Helix 25
AC7
A
467 503Right-handed alpha
Helix 26
AC8
A
548 561Right-handed alpha
Helix 27
AC9
A
563 584Right-handed alpha
Helix 28
AD1
A
612 618Right-handed 310
Helix 29
AD2
A
661 677Right-handed alpha
Helix 30
AD3
A
687 697Right-handed alpha
Helix 31
AD4
A
705 707Right-handed 310
Helix 32
AD5
A
712 725Right-handed alpha
Helix 33
AD6
B
19 25Right-handed alpha
Helix 34
AD7
B
35 44Right-handed alpha
Helix 35
AD8
B
46 58Right-handed alpha
Helix 36
AD9
B
59 64Right-handed alpha
Helix 37
AE1
B
72 98Right-handed alpha
Helix 38
AE2
B
102 120Right-handed alpha
Helix 39
AE3
B
130 146Right-handed alpha
Helix 40
AE4
B
168 196Right-handed alpha
Helix 41
AE5
B
200 205Right-handed 310
Helix 42
AE6
B
206 225Right-handed alpha
Helix 43
AE7
B
225 230Right-handed alpha
Helix 44
AE8
B
242 252Right-handed alpha
Helix 45
AE9
B
253 257Right-handed 310
Helix 46
AF1
B
258 282Right-handed alpha
Helix 47
AF2
B
291 308Right-handed alpha
Helix 48
AF3
B
332 339Right-handed alpha
Helix 49
AF4
B
339 366Right-handed alpha
Helix 50
AF5
B
370 388Right-handed alpha
Helix 51
AF6
B
396 407Right-handed alpha
Helix 52
AF7
B
411 427Right-handed alpha
Helix 53
AF8
B
438 447Right-handed alpha
Helix 54
AF9
B
448 453Right-handed alpha
Helix 55
AG1
B
454 456Right-handed 310
Helix 56
AG2
B
457 465Right-handed alpha
Helix 57
AG3
B
467 503Right-handed alpha
Helix 58
AG4
B
548 561Right-handed alpha
Helix 59
AG5
B
563 584Right-handed alpha
Helix 60
AG6
B
609 618Right-handed 310
Helix 61
AG7
B
661 676Right-handed alpha
Helix 62
AG8
B
687 697Right-handed alpha
Helix 63
AG9
B
705 707Right-handed 310
Helix 64
AH1
B
712 725Right-handed alpha
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There are 5 sheets in PDB entry 8YR9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 13first strand
Strand 2
B
9 13anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 128first strand
Strand 2
A
394 395anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
520 522first strand
Strand 2
A
509 513anti-parallel
Strand 3
A
535 539anti-parallel
Strand 4
A
648 652parallel
Strand 5
A
680 684parallel
Strand 6
A
709 710parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 128first strand
Strand 2
B
394 395anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
520 522first strand
Strand 2
B
509 513anti-parallel
Strand 3
B
535 539anti-parallel
Strand 4
B
648 652parallel
Strand 5
B
680 684parallel
Strand 6
B
709 710parallel
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