Analysis of interatomic Contacts of Structural Units in PDB entry:
8YRE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YRE entry

There are 4 chains in PDB entry 8YRE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 4	LEU 406
B	GLU 4	LEU 406
C	GLU 4	LEU 406
D	MET 1	SER 143

There are 73 helices in PDB entry 8YRE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	26	Right-handed alpha
Helix 2	AA2	A	29	32	Right-handed 310
Helix 3	AA3	A	41	49	Right-handed alpha
Helix 4	AA4	A	64	76	Right-handed alpha
Helix 5	AA5	A	94	100	Right-handed alpha
Helix 6	AA6	A	101	106	Right-handed alpha
Helix 7	AA7	A	107	109	Right-handed 310
Helix 8	AA8	A	125	137	Right-handed alpha
Helix 9	AA9	A	192	202	Right-handed alpha
Helix 10	AB1	A	224	229	Right-handed alpha
Helix 11	AB2	A	255	271	Right-handed alpha
Helix 12	AB3	A	272	276	Right-handed 310
Helix 13	AB4	A	366	370	Right-handed 310
Helix 14	AB5	B	21	26	Right-handed alpha
Helix 15	AB6	B	29	32	Right-handed 310
Helix 16	AB7	B	41	49	Right-handed alpha
Helix 17	AB8	B	64	80	Right-handed alpha
Helix 18	AB9	B	94	100	Right-handed alpha
Helix 19	AC1	B	101	106	Right-handed alpha
Helix 20	AC2	B	107	109	Right-handed 310
Helix 21	AC3	B	125	137	Right-handed alpha
Helix 22	AC4	B	192	202	Right-handed alpha
Helix 23	AC5	B	224	229	Right-handed alpha
Helix 24	AC6	B	255	271	Right-handed alpha
Helix 25	AC7	B	272	276	Right-handed 310
Helix 26	AC8	B	366	370	Right-handed 310
Helix 27	AC9	C	21	26	Right-handed alpha
Helix 28	AD1	C	29	32	Right-handed 310
Helix 29	AD2	C	41	49	Right-handed alpha
Helix 30	AD3	C	64	80	Right-handed alpha
Helix 31	AD4	C	94	100	Right-handed alpha
Helix 32	AD5	C	101	106	Right-handed alpha
Helix 33	AD6	C	107	109	Right-handed 310
Helix 34	AD7	C	125	137	Right-handed alpha
Helix 35	AD8	C	192	202	Right-handed alpha
Helix 36	AD9	C	224	229	Right-handed alpha
Helix 37	AE1	C	255	271	Right-handed alpha
Helix 38	AE2	C	272	276	Right-handed 310
Helix 39	AE3	C	366	370	Right-handed 310
Helix 40	AE4	D	11	15	Right-handed 310
Helix 41	AE5	D	22	25	Right-handed 310
Helix 42	AE6	D	34	44	Right-handed alpha
Helix 43	AE7	D	56	59	Right-handed 310
Helix 44	AE8	D	60	71	Right-handed alpha
Helix 45	AE9	D	87	93	Right-handed alpha
Helix 46	AF1	D	118	126	Right-handed alpha
Helix 47	AF2	D	181	184	Right-handed 310
Helix 48	AF3	D	197	204	Right-handed alpha
Helix 49	AF4	D	224	241	Right-handed alpha
Helix 50	AF5	D	242	245	Right-handed 310
Helix 51	AF6	E	11	15	Right-handed 310
Helix 52	AF7	E	22	25	Right-handed 310
Helix 53	AF8	E	34	44	Right-handed alpha
Helix 54	AF9	E	56	59	Right-handed 310
Helix 55	AG1	E	60	71	Right-handed alpha
Helix 56	AG2	E	87	93	Right-handed alpha
Helix 57	AG3	E	93	98	Right-handed alpha
Helix 58	AG4	E	118	126	Right-handed alpha
Helix 59	AG5	E	181	184	Right-handed 310
Helix 60	AG6	E	197	204	Right-handed alpha
Helix 61	AG7	E	224	241	Right-handed alpha
Helix 62	AG8	E	242	245	Right-handed 310
Helix 63	AG9	F	11	15	Right-handed 310
Helix 64	AH1	F	22	25	Right-handed 310
Helix 65	AH2	F	34	44	Right-handed alpha
Helix 66	AH3	F	56	59	Right-handed 310
Helix 67	AH4	F	60	71	Right-handed alpha
Helix 68	AH5	F	87	93	Right-handed alpha
Helix 69	AH6	F	118	126	Right-handed alpha
Helix 70	AH7	F	181	184	Right-handed 310
Helix 71	AH8	F	197	204	Right-handed alpha
Helix 72	AH9	F	224	241	Right-handed alpha
Helix 73	AI1	F	242	245	Right-handed 310

There are 44 sheets in PDB entry 8YRE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	86	first strand
Strand 2	A	54	60	parallel
Strand 3	A	6	11	parallel
Strand 4	A	112	116	parallel
Strand 5	A	187	190	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	35	first strand
Strand 2	A	38	39	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	161	first strand
Strand 2	A	166	171	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	288	first strand
Strand 2	A	305	306	parallel
Strand 3	A	323	329	parallel
Strand 4	A	340	346	parallel
Strand 5	A	357	359	parallel
Strand 6	A	384	386	parallel
Strand 7	A	400	401	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	292	293	first strand
Strand 2	A	310	312	parallel
Strand 3	A	323	329	parallel
Strand 4	A	340	346	parallel
Strand 5	A	371	373	parallel
Strand 6	A	389	390	parallel
Strand 7	A	404	405	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	334	335	first strand
Strand 2	A	351	352	parallel
Strand 3	A	377	379	parallel
Strand 4	A	394	396	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	86	first strand
Strand 2	B	54	60	parallel
Strand 3	B	6	11	parallel
Strand 4	B	112	116	parallel
Strand 5	B	187	190	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	35	first strand
Strand 2	B	38	39	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	122	first strand
Strand 2	B	248	250	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	161	first strand
Strand 2	B	166	171	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	287	288	first strand
Strand 2	B	305	306	parallel
Strand 3	B	323	325	parallel
Strand 4	B	340	342	parallel
Strand 5	B	357	359	parallel
Strand 6	B	384	386	parallel
Strand 7	B	400	401	parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	292	293	first strand
Strand 2	B	310	312	parallel
Strand 3	B	327	329	parallel
Strand 4	B	344	346	parallel
Strand 5	B	371	373	parallel
Strand 6	B	389	390	parallel
Strand 7	B	404	405	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	334	335	first strand
Strand 2	B	351	352	parallel
Strand 3	B	377	379	parallel
Strand 4	B	394	396	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	86	first strand
Strand 2	C	54	60	parallel
Strand 3	C	6	11	parallel
Strand 4	C	112	116	parallel
Strand 5	C	189	190	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	35	first strand
Strand 2	C	38	39	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	146	first strand
Strand 2	C	181	182	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	161	first strand
Strand 2	C	166	171	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	287	288	first strand
Strand 2	C	305	306	parallel
Strand 3	C	323	325	parallel
Strand 4	C	340	342	parallel
Strand 5	C	357	359	parallel
Strand 6	C	384	386	parallel
Strand 7	C	400	401	parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	292	294	first strand
Strand 2	C	310	312	parallel
Strand 3	C	327	329	parallel
Strand 4	C	344	346	parallel
Strand 5	C	371	373	parallel
Strand 6	C	389	390	parallel
Strand 7	C	404	405	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	334	335	first strand
Strand 2	C	351	352	parallel
Strand 3	C	378	379	parallel
Strand 4	C	395	396	parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	74	79	first strand
Strand 2	D	48	53	parallel
Strand 3	D	3	8	parallel
Strand 4	D	105	109	parallel
Strand 5	D	171	179	anti-parallel
Strand 6	D	132	138	anti-parallel
Strand 7	D	208	212	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	28	first strand
Strand 2	D	31	32	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	113	first strand
Strand 2	D	218	219	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	150	first strand
Strand 2	D	157	162	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	255	257	first strand
Strand 2	D	273	275	parallel
Strand 3	D	291	292	parallel
Strand 4	D	308	309	parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	262	263	first strand
Strand 2	D	280	281	parallel
Strand 3	D	297	298	parallel
Strand 4	D	314	315	parallel
Strand 5	D	331	333	parallel
Strand 6	D	348	350	parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	268	269	first strand
Strand 2	D	286	288	parallel
Strand 3	D	303	305	parallel
Strand 4	D	320	322	parallel
Strand 5	D	338	340	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	342	344	first strand
Strand 2	D	358	360	parallel

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There are 7 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	74	79	first strand
Strand 2	E	48	53	parallel
Strand 3	E	3	8	parallel
Strand 4	E	105	109	parallel
Strand 5	E	171	179	anti-parallel
Strand 6	E	132	138	anti-parallel
Strand 7	E	208	209	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	27	28	first strand
Strand 2	E	31	32	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	112	113	first strand
Strand 2	E	218	219	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	146	150	first strand
Strand 2	E	157	162	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	255	257	first strand
Strand 2	E	273	275	parallel
Strand 3	E	291	292	parallel
Strand 4	E	308	309	parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	262	263	first strand
Strand 2	E	280	281	parallel
Strand 3	E	297	298	parallel
Strand 4	E	314	315	parallel
Strand 5	E	331	333	parallel
Strand 6	E	348	350	parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	268	269	first strand
Strand 2	E	286	288	parallel
Strand 3	E	303	305	parallel
Strand 4	E	320	322	parallel
Strand 5	E	338	340	parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	342	344	first strand
Strand 2	E	358	360	parallel

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There are 7 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	74	79	first strand
Strand 2	F	48	53	parallel
Strand 3	F	3	8	parallel
Strand 4	F	105	109	parallel
Strand 5	F	171	179	anti-parallel
Strand 6	F	132	138	anti-parallel
Strand 7	F	208	209	parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	27	28	first strand
Strand 2	F	31	32	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	112	113	first strand
Strand 2	F	218	219	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	146	149	first strand
Strand 2	F	159	162	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	255	257	first strand
Strand 2	F	273	275	parallel
Strand 3	F	291	292	parallel
Strand 4	F	308	309	parallel

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There are 6 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	262	263	first strand
Strand 2	F	280	281	parallel
Strand 3	F	297	298	parallel
Strand 4	F	314	315	parallel
Strand 5	F	331	333	parallel
Strand 6	F	348	350	parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	268	269	first strand
Strand 2	F	286	288	parallel
Strand 3	F	303	305	parallel
Strand 4	F	320	322	parallel
Strand 5	F	338	340	parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	342	344	first strand
Strand 2	F	358	360	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YRE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YRE