Analysis of interatomic Contacts of Structural Units in PDB entry:
8YRJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YRJ entry

There are 4 chains in PDB entry 8YRJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 24LYS 237
G
 PRO 22ARG 58
H
 GLY 20ASP 62
B
 GLN 40LEU 199
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 8YRJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
135 137Right-handed 310
Helix 2
AA2
A
165 169Right-handed 310
Helix 3
AA3
A
202 204Right-handed 310
Helix 4
AA4
A
205 236Right-handed alpha
Helix 5
AA5
G
23 58Right-handed alpha
Helix 6
AA6
H
21 62Right-handed alpha
Helix 7
AA7
B
41 75Right-handed alpha
Helix 8
AA8
B
91 111Right-handed alpha
Helix 9
AA9
B
117 154Right-handed alpha
Helix 10
AB1
B
160 199Right-handed alpha
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There are 6 sheets in PDB entry 8YRJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 33first strand
Strand 2
A
45 49anti-parallel
Strand 3
A
76 79anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 40first strand
Strand 2
A
103 108parallel
Strand 3
A
88 94anti-parallel
Strand 4
A
61 65anti-parallel
Strand 5
A
68 69anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 116first strand
Strand 2
A
129 133anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 121first strand
Strand 2
A
188 192parallel
Strand 3
A
170 178anti-parallel
Strand 4
A
139 146anti-parallel
Strand 5
A
149 154anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 121first strand
Strand 2
A
188 192parallel
Strand 3
A
170 178anti-parallel
Strand 4
A
181 184anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 127first strand
Strand 2
A
161 164anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il