Analysis of interatomic Contacts of Structural Units in PDB entry:
8YRL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YRL entry

There are 2 chains in PDB entry 8YRL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 76	GLN 536
B	THR 76	GLN 536

There are 39 helices in PDB entry 8YRL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	88	93	Right-handed alpha
Helix 2	AA2	A	162	166	Right-handed 310
Helix 3	AA3	A	175	182	Right-handed alpha
Helix 4	AA4	A	182	191	Right-handed alpha
Helix 5	AA5	A	207	217	Right-handed alpha
Helix 6	AA6	A	230	237	Right-handed alpha
Helix 7	AA7	A	237	249	Right-handed alpha
Helix 8	AA8	A	267	275	Right-handed alpha
Helix 9	AA9	A	276	278	Right-handed 310
Helix 10	AB1	A	292	300	Right-handed alpha
Helix 11	AB2	A	304	308	Right-handed 310
Helix 12	AB3	A	313	322	Right-handed alpha
Helix 13	AB4	A	322	327	Right-handed alpha
Helix 14	AB5	A	333	346	Right-handed alpha
Helix 15	AB6	A	365	370	Right-handed alpha
Helix 16	AB7	A	388	393	Right-handed alpha
Helix 17	AB8	A	395	400	Right-handed alpha
Helix 18	AB9	A	401	404	Right-handed 310
Helix 19	AC1	A	446	450	Right-handed 310
Helix 20	AC2	A	462	467	Right-handed 310
Helix 21	AC3	B	88	93	Right-handed alpha
Helix 22	AC4	B	162	166	Right-handed 310
Helix 23	AC5	B	175	182	Right-handed alpha
Helix 24	AC6	B	182	191	Right-handed alpha
Helix 25	AC7	B	207	217	Right-handed alpha
Helix 26	AC8	B	230	237	Right-handed alpha
Helix 27	AC9	B	237	249	Right-handed alpha
Helix 28	AD1	B	267	275	Right-handed alpha
Helix 29	AD2	B	276	278	Right-handed 310
Helix 30	AD3	B	292	300	Right-handed alpha
Helix 31	AD4	B	304	308	Right-handed 310
Helix 32	AD5	B	313	322	Right-handed alpha
Helix 33	AD6	B	322	327	Right-handed alpha
Helix 34	AD7	B	333	346	Right-handed alpha
Helix 35	AD8	B	365	370	Right-handed alpha
Helix 36	AD9	B	388	393	Right-handed alpha
Helix 37	AE1	B	395	400	Right-handed alpha
Helix 38	AE2	B	401	404	Right-handed 310
Helix 39	AE3	B	462	467	Right-handed 310

There are 10 sheets in PDB entry 8YRL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	120	first strand
Strand 2	A	407	416	parallel
Strand 3	A	423	431	anti-parallel
Strand 4	A	435	441	anti-parallel
Strand 5	A	481	494	anti-parallel
Strand 6	A	497	506	anti-parallel
Strand 7	A	509	518	anti-parallel
Strand 8	A	96	108	parallel
Strand 9	A	129	131	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	120	first strand
Strand 2	A	407	416	parallel
Strand 3	A	423	431	anti-parallel
Strand 4	A	435	441	anti-parallel
Strand 5	A	481	494	anti-parallel
Strand 6	A	497	506	anti-parallel
Strand 7	A	509	518	anti-parallel
Strand 8	A	96	108	parallel
Strand 9	A	151	157	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	227	first strand
Strand 2	A	196	202	parallel
Strand 3	A	168	173	parallel
Strand 4	A	255	258	parallel
Strand 5	A	309	312	anti-parallel
Strand 6	A	285	287	anti-parallel
Strand 7	A	350	352	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	265	first strand
Strand 2	A	377	378	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	456	first strand
Strand 2	A	473	474	parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	119	first strand
Strand 2	B	407	416	parallel
Strand 3	B	423	431	anti-parallel
Strand 4	B	435	441	anti-parallel
Strand 5	B	481	494	anti-parallel
Strand 6	B	497	506	anti-parallel
Strand 7	B	509	518	anti-parallel
Strand 8	B	96	108	parallel
Strand 9	B	129	131	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	119	first strand
Strand 2	B	407	416	parallel
Strand 3	B	423	431	anti-parallel
Strand 4	B	435	441	anti-parallel
Strand 5	B	481	494	anti-parallel
Strand 6	B	497	506	anti-parallel
Strand 7	B	509	518	anti-parallel
Strand 8	B	96	108	parallel
Strand 9	B	151	157	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	227	first strand
Strand 2	B	196	202	parallel
Strand 3	B	168	173	parallel
Strand 4	B	255	258	parallel
Strand 5	B	309	312	anti-parallel
Strand 6	B	285	287	anti-parallel
Strand 7	B	350	352	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	264	265	first strand
Strand 2	B	377	378	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	457	first strand
Strand 2	B	473	475	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YRL

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YRL