Analysis of interatomic Contacts of Structural Units in PDB entry:
8YRP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YRP entry

There are 4 chains in PDB entry 8YRP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 14	ASN 1133
B	GLN 14	ASN 1133
C	GLN 14	ASN 1133
n	GLN 1	GLN 1

There are 52 helices in PDB entry 8YRP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	292	302	Right-handed alpha
Helix 2	AA2	A	336	341	Right-handed alpha
Helix 3	AA3	A	347	351	Right-handed 310
Helix 4	AA4	A	363	369	Right-handed alpha
Helix 5	AA5	A	382	386	Right-handed 310
Helix 6	AA6	A	414	420	Right-handed alpha
Helix 7	AA7	A	735	742	Right-handed alpha
Helix 8	AA8	A	744	753	Right-handed alpha
Helix 9	AA9	A	758	781	Right-handed alpha
Helix 10	AB1	A	814	824	Right-handed alpha
Helix 11	AB2	A	864	876	Right-handed alpha
Helix 12	AB3	A	898	905	Right-handed alpha
Helix 13	AB4	A	911	917	Right-handed alpha
Helix 14	AB5	A	917	939	Right-handed alpha
Helix 15	AB6	A	943	965	Right-handed alpha
Helix 16	AB7	A	974	982	Right-handed alpha
Helix 17	AB8	A	983	1029	Right-handed alpha
Helix 18	AB9	B	292	302	Right-handed alpha
Helix 19	AC1	B	335	341	Right-handed alpha
Helix 20	AC2	B	362	368	Right-handed alpha
Helix 21	AC3	B	403	406	Right-handed 310
Helix 22	AC4	B	414	420	Right-handed alpha
Helix 23	AC5	B	436	441	Right-handed alpha
Helix 24	AC6	B	744	753	Right-handed alpha
Helix 25	AC7	B	756	780	Right-handed alpha
Helix 26	AC8	B	814	824	Right-handed alpha
Helix 27	AC9	B	864	883	Right-handed alpha
Helix 28	AD1	B	884	886	Right-handed 310
Helix 29	AD2	B	896	905	Right-handed alpha
Helix 30	AD3	B	917	939	Right-handed alpha
Helix 31	AD4	B	943	966	Right-handed alpha
Helix 32	AD5	B	974	982	Right-handed alpha
Helix 33	AD6	B	983	1030	Right-handed alpha
Helix 34	AD7	C	292	302	Right-handed alpha
Helix 35	AD8	C	336	341	Right-handed alpha
Helix 36	AD9	C	363	368	Right-handed alpha
Helix 37	AE1	C	404	408	Right-handed 310
Helix 38	AE2	C	414	420	Right-handed alpha
Helix 39	AE3	C	735	740	Right-handed alpha
Helix 40	AE4	C	744	753	Right-handed alpha
Helix 41	AE5	C	756	781	Right-handed alpha
Helix 42	AE6	C	814	824	Right-handed alpha
Helix 43	AE7	C	864	881	Right-handed alpha
Helix 44	AE8	C	895	906	Right-handed alpha
Helix 45	AE9	C	911	917	Right-handed alpha
Helix 46	AF1	C	917	939	Right-handed alpha
Helix 47	AF2	C	943	963	Right-handed alpha
Helix 48	AF3	C	964	966	Right-handed 310
Helix 49	AF4	C	974	982	Right-handed alpha
Helix 50	AF5	C	983	1029	Right-handed alpha
Helix 51	AF6	n	87	91	Right-handed 310
Helix 52	AF7	o	79	83	Right-handed 310

There are 50 sheets in PDB entry 8YRP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	37	first strand
Strand 2	A	220	230	parallel
Strand 3	A	198	206	anti-parallel
Strand 4	A	186	195	anti-parallel
Strand 5	A	89	96	anti-parallel
Strand 6	A	263	267	anti-parallel
Strand 7	A	62	65	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	55	first strand
Strand 2	A	269	277	anti-parallel
Strand 3	A	283	288	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	A	235	240	anti-parallel
Strand 3	A	101	107	anti-parallel
Strand 4	A	116	121	anti-parallel
Strand 5	A	126	135	anti-parallel
Strand 6	A	158	170	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	309	317	first strand
Strand 2	A	590	597	anti-parallel
Strand 3	A	607	611	anti-parallel
Strand 4	A	646	649	anti-parallel
Strand 5	A	641	643	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	356	first strand
Strand 2	A	392	400	anti-parallel
Strand 3	A	506	514	anti-parallel
Strand 4	A	428	435	anti-parallel
Strand 5	A	374	377	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	450	452	first strand
Strand 2	A	490	492	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	537	541	first strand
Strand 2	A	544	552	anti-parallel
Strand 3	A	582	586	anti-parallel
Strand 4	A	573	575	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	652	653	first strand
Strand 2	A	691	694	parallel
Strand 3	A	668	671	anti-parallel
Strand 4	A	662	665	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	710	711	first strand
Strand 2	A	1072	1073	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	724	726	first strand
Strand 2	A	1057	1059	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	731	734	first strand
Strand 2	A	856	859	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1079	1081	first strand
Strand 2	A	1084	1088	anti-parallel
Strand 3	A	1118	1120	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1092	1095	first strand
Strand 2	A	1100	1103	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	30	first strand
Strand 2	B	61	65	anti-parallel
Strand 3	B	263	277	anti-parallel
Strand 4	B	89	96	anti-parallel
Strand 5	B	186	195	anti-parallel
Strand 6	B	198	207	anti-parallel
Strand 7	B	222	227	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	55	first strand
Strand 2	B	263	277	anti-parallel
Strand 3	B	283	288	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	170	first strand
Strand 2	B	126	131	anti-parallel
Strand 3	B	116	120	anti-parallel
Strand 4	B	103	107	anti-parallel
Strand 5	B	235	239	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	135	first strand
Strand 2	B	158	161	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	309	316	first strand
Strand 2	B	591	597	anti-parallel
Strand 3	B	607	611	anti-parallel
Strand 4	B	646	649	anti-parallel
Strand 5	B	640	643	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	324	326	first strand
Strand 2	B	537	541	parallel
Strand 3	B	544	552	anti-parallel
Strand 4	B	582	586	anti-parallel
Strand 5	B	573	575	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	356	first strand
Strand 2	B	393	401	anti-parallel
Strand 3	B	505	512	anti-parallel
Strand 4	B	429	435	anti-parallel
Strand 5	B	374	377	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	360	first strand
Strand 2	B	522	523	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	471	472	first strand
Strand 2	B	486	487	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	651	658	first strand
Strand 2	B	690	695	parallel
Strand 3	B	668	671	anti-parallel
Strand 4	B	662	665	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	700	702	first strand
Strand 2	C	786	788	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	715	716	first strand
Strand 2	B	1067	1068	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	725	726	first strand
Strand 2	B	1057	1062	anti-parallel
Strand 3	B	1049	1054	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	732	734	first strand
Strand 2	B	856	858	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1074	1075	first strand
Strand 2	B	1092	1095	anti-parallel
Strand 3	B	1100	1103	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1120	1123	first strand
Strand 2	B	1084	1086	anti-parallel
Strand 3	B	1079	1081	anti-parallel
Strand 4	B	1131	1132	parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	61	65	anti-parallel
Strand 3	C	263	277	anti-parallel
Strand 4	C	89	96	anti-parallel
Strand 5	C	186	189	anti-parallel
Strand 6	C	205	207	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	55	first strand
Strand 2	C	263	277	anti-parallel
Strand 3	C	283	288	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	85	first strand
Strand 2	C	235	239	anti-parallel
Strand 3	C	103	107	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	121	first strand
Strand 2	C	126	135	anti-parallel
Strand 3	C	158	170	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	195	first strand
Strand 2	C	198	203	anti-parallel
Strand 3	C	222	227	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	309	310	first strand
Strand 2	C	590	597	anti-parallel
Strand 3	C	315	317	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	309	310	first strand
Strand 2	C	590	597	anti-parallel
Strand 3	C	607	611	anti-parallel
Strand 4	C	646	649	anti-parallel
Strand 5	C	641	643	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	352	355	first strand
Strand 2	C	392	401	anti-parallel
Strand 3	C	505	514	anti-parallel
Strand 4	C	430	435	anti-parallel
Strand 5	C	374	377	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	450	452	first strand
Strand 2	C	490	492	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	536	541	first strand
Strand 2	C	544	552	anti-parallel
Strand 3	C	583	586	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	652	653	first strand
Strand 2	C	691	694	parallel
Strand 3	C	668	671	anti-parallel
Strand 4	C	662	665	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	710	718	first strand
Strand 2	C	1065	1075	anti-parallel
Strand 3	C	1093	1095	anti-parallel
Strand 4	C	1100	1102	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	724	726	first strand
Strand 2	C	1057	1059	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1079	1081	first strand
Strand 2	C	1084	1088	anti-parallel
Strand 3	C	1118	1123	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	3	6	first strand
Strand 2	n	21	25	anti-parallel
Strand 3	n	78	80	anti-parallel
Strand 4	n	72	73	anti-parallel

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There are 5 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	58	60	first strand
Strand 2	n	45	52	anti-parallel
Strand 3	n	34	41	anti-parallel
Strand 4	n	93	99	anti-parallel
Strand 5	n	105	106	anti-parallel

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There are 5 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	58	60	first strand
Strand 2	n	45	52	anti-parallel
Strand 3	n	34	41	anti-parallel
Strand 4	n	93	99	anti-parallel
Strand 5	n	110	111	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	68	69	first strand
Strand 2	n	82	83	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	o	4	6	first strand
Strand 2	o	22	25	anti-parallel
Strand 3	o	71	72	anti-parallel

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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	o	10	12	first strand
Strand 2	o	101	104	parallel
Strand 3	o	84	86	anti-parallel

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There are 5 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	o	53	54	first strand
Strand 2	o	44	49	anti-parallel
Strand 3	o	34	38	anti-parallel
Strand 4	o	88	90	anti-parallel
Strand 5	o	96	97	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YRP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YRP