Analysis of interatomic Contacts of Structural Units in PDB entry:
8YRS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YRS entry

There are 4 chains in PDB entry 8YRS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 62LYS 602
B
 SER 63LYS 602
C
 DA 1 DC 13
D
 DG 2 DC 25
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 8YRS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
64 69Right-handed 310
Helix 2
AA2
A
75 86Right-handed alpha
Helix 3
AA3
A
95 105Right-handed alpha
Helix 4
AA4
A
120 130Right-handed alpha
Helix 5
AA5
A
140 155Right-handed alpha
Helix 6
AA6
A
166 179Right-handed alpha
Helix 7
AA7
A
190 197Right-handed alpha
Helix 8
AA8
A
197 210Right-handed alpha
Helix 9
AA9
A
221 225Right-handed 310
Helix 10
AB1
A
232 238Right-handed 310
Helix 11
AB2
A
239 245Right-handed alpha
Helix 12
AB3
A
258 269Right-handed alpha
Helix 13
AB4
A
296 310Right-handed alpha
Helix 14
AB5
A
323 337Right-handed alpha
Helix 15
AB6
A
349 362Right-handed alpha
Helix 16
AB7
A
394 403Right-handed alpha
Helix 17
AB8
A
419 431Right-handed alpha
Helix 18
AB9
A
435 449Right-handed alpha
Helix 19
AC1
A
453 463Right-handed alpha
Helix 20
AC2
A
467 471Right-handed 310
Helix 21
AC3
A
499 516Right-handed alpha
Helix 22
AC4
A
521 531Right-handed alpha
Helix 23
AC5
A
534 538Right-handed 310
Helix 24
AC6
A
548 562Right-handed alpha
Helix 25
AC7
A
584 591Right-handed 310
Helix 26
AC8
B
64 69Right-handed 310
Helix 27
AC9
B
75 86Right-handed alpha
Helix 28
AD1
B
95 105Right-handed alpha
Helix 29
AD2
B
120 130Right-handed alpha
Helix 30
AD3
B
140 155Right-handed alpha
Helix 31
AD4
B
166 179Right-handed alpha
Helix 32
AD5
B
190 197Right-handed alpha
Helix 33
AD6
B
197 210Right-handed alpha
Helix 34
AD7
B
221 225Right-handed 310
Helix 35
AD8
B
232 238Right-handed 310
Helix 36
AD9
B
239 245Right-handed alpha
Helix 37
AE1
B
258 269Right-handed alpha
Helix 38
AE2
B
296 310Right-handed alpha
Helix 39
AE3
B
323 337Right-handed alpha
Helix 40
AE4
B
349 362Right-handed alpha
Helix 41
AE5
B
394 403Right-handed alpha
Helix 42
AE6
B
419 430Right-handed alpha
Helix 43
AE7
B
431 433Right-handed 310
Helix 44
AE8
B
435 449Right-handed alpha
Helix 45
AE9
B
453 463Right-handed alpha
Helix 46
AF1
B
467 471Right-handed 310
Helix 47
AF2
B
499 516Right-handed alpha
Helix 48
AF3
B
521 530Right-handed alpha
Helix 49
AF4
B
534 538Right-handed 310
Helix 50
AF5
B
548 562Right-handed alpha
Helix 51
AF6
B
584 591Right-handed 310
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There are 8 sheets in PDB entry 8YRS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 161first strand
Strand 2
A
186 189parallel
Strand 3
A
133 137parallel
Strand 4
A
213 219parallel
Strand 5
A
249 254parallel
Strand 6
A
109 112parallel
Strand 7
A
275 278parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 292first strand
Strand 2
A
412 418parallel
Strand 3
A
385 388parallel
Strand 4
A
317 320parallel
Strand 5
A
367 370parallel
Strand 6
A
341 344parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
494 498first strand
Strand 2
A
597 601anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
565 571first strand
Strand 2
A
576 582anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 161first strand
Strand 2
B
186 189parallel
Strand 3
B
133 137parallel
Strand 4
B
213 219parallel
Strand 5
B
249 254parallel
Strand 6
B
109 112parallel
Strand 7
B
275 278parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
286 292first strand
Strand 2
B
412 418parallel
Strand 3
B
383 388parallel
Strand 4
B
316 320parallel
Strand 5
B
367 370parallel
Strand 6
B
341 344parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
494 498first strand
Strand 2
B
597 601anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
565 571first strand
Strand 2
B
576 582anti-parallel
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