Analysis of interatomic Contacts of Structural Units in PDB entry:
8YRY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YRY entry

There are 3 chains in PDB entry 8YRY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 71LEU 205
H
 GLN 20SER 239
L
 ASP 20CYS 233
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 8YRY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
187 191Right-handed 310
Helix 2
AA2
A
198 202Right-handed 310
Helix 3
AA3
H
180 182Right-handed 310
Helix 4
AA4
H
211 213Right-handed 310
Helix 5
AA5
L
98 102Right-handed 310
Helix 6
AA6
L
140 147Right-handed alpha
Helix 7
AA7
L
202 206Right-handed alpha
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There are 10 sheets in PDB entry 8YRY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 98first strand
Strand 2
A
133 135parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
23 26first strand
Strand 2
H
36 43anti-parallel
Strand 3
H
97 103anti-parallel
Strand 4
H
87 91anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
30 31first strand
Strand 2
H
131 135parallel
Strand 3
H
111 117anti-parallel
Strand 4
H
54 60anti-parallel
Strand 5
H
66 71anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
144 148first strand
Strand 2
H
159 169anti-parallel
Strand 3
H
200 209anti-parallel
Strand 4
H
187 189anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
144 148first strand
Strand 2
H
159 169anti-parallel
Strand 3
H
200 209anti-parallel
Strand 4
H
193 194anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
174 178first strand
Strand 2
H
218 224anti-parallel
Strand 3
H
229 235anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
30 32first strand
Strand 2
L
121 125parallel
Strand 3
L
104 106anti-parallel
Strand 4
L
54 57anti-parallel
Strand 5
L
63 67anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
38 42first strand
Strand 2
L
90 94anti-parallel
Strand 3
L
81 84anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
133 137first strand
Strand 2
L
148 158anti-parallel
Strand 3
L
192 201anti-parallel
Strand 4
L
178 182anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
163 169first strand
Strand 2
L
210 217anti-parallel
Strand 3
L
224 229anti-parallel
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