Analysis of interatomic Contacts of Structural Units in PDB entry:
8YS5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YS5 entry

There are 8 chains in PDB entry 8YS5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	THR 6	ARG 111
A	MET 1	GLU 374
C	MET 1	GLN 273
B	MET 1	VAL 184
F	THR 6	ARG 111
G	MET 1	GLU 374
H	MET 1	GLN 273
I	MET 1	VAL 184

There are 82 helices in PDB entry 8YS5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	23	28	Right-handed alpha
Helix 2	AA2	D	52	56	Right-handed 310
Helix 3	AA3	D	60	66	Right-handed alpha
Helix 4	AA4	D	85	97	Right-handed alpha
Helix 5	AA5	D	103	109	Right-handed 310
Helix 6	AA6	A	8	20	Right-handed alpha
Helix 7	AA7	A	33	43	Right-handed alpha
Helix 8	AA8	A	44	47	Right-handed 310
Helix 9	AA9	A	55	69	Right-handed alpha
Helix 10	AB1	A	79	95	Right-handed alpha
Helix 11	AB2	A	122	127	Right-handed alpha
Helix 12	AB3	A	144	161	Right-handed alpha
Helix 13	AB4	A	169	175	Right-handed alpha
Helix 14	AB5	A	183	191	Right-handed alpha
Helix 15	AB6	A	242	259	Right-handed alpha
Helix 16	AB7	A	260	265	Right-handed alpha
Helix 17	AB8	A	284	296	Right-handed alpha
Helix 18	AB9	A	316	327	Right-handed alpha
Helix 19	AC1	A	340	347	Right-handed alpha
Helix 20	AC2	A	348	350	Right-handed 310
Helix 21	AC3	A	365	374	Right-handed alpha
Helix 22	AC4	C	24	38	Right-handed alpha
Helix 23	AC5	C	41	43	Right-handed 310
Helix 24	AC6	C	54	60	Right-handed 310
Helix 25	AC7	C	72	84	Right-handed alpha
Helix 26	AC8	C	102	113	Right-handed alpha
Helix 27	AC9	C	156	165	Right-handed alpha
Helix 28	AD1	C	176	189	Right-handed alpha
Helix 29	AD2	C	206	211	Right-handed 310
Helix 30	AD3	C	214	225	Right-handed alpha
Helix 31	AD4	C	228	234	Right-handed alpha
Helix 32	AD5	C	236	240	Right-handed 310
Helix 33	AD6	C	257	270	Right-handed alpha
Helix 34	AD7	B	14	16	Right-handed 310
Helix 35	AD8	B	17	30	Right-handed alpha
Helix 36	AD9	B	76	83	Right-handed alpha
Helix 37	AE1	B	103	110	Right-handed alpha
Helix 38	AE2	B	116	124	Right-handed alpha
Helix 39	AE3	B	130	144	Right-handed alpha
Helix 40	AE4	B	147	157	Right-handed alpha
Helix 41	AE5	B	158	159	Right-handed 310
Helix 42	AE6	B	160	162	Right-handed 310
Helix 43	AE7	B	163	181	Right-handed alpha
Helix 44	AE8	F	24	28	Right-handed 310
Helix 45	AE9	F	52	56	Right-handed 310
Helix 46	AF1	F	60	65	Right-handed alpha
Helix 47	AF2	F	85	97	Right-handed alpha
Helix 48	AF3	F	103	109	Right-handed 310
Helix 49	AF4	G	8	20	Right-handed alpha
Helix 50	AF5	G	32	46	Right-handed alpha
Helix 51	AF6	G	55	69	Right-handed alpha
Helix 52	AF7	G	79	84	Right-handed alpha
Helix 53	AF8	G	85	95	Right-handed alpha
Helix 54	AF9	G	122	127	Right-handed alpha
Helix 55	AG1	G	144	161	Right-handed alpha
Helix 56	AG2	G	169	175	Right-handed alpha
Helix 57	AG3	G	183	190	Right-handed alpha
Helix 58	AG4	G	242	259	Right-handed alpha
Helix 59	AG5	G	260	265	Right-handed alpha
Helix 60	AG6	G	284	297	Right-handed alpha
Helix 61	AG7	G	316	327	Right-handed alpha
Helix 62	AG8	G	340	347	Right-handed alpha
Helix 63	AG9	G	348	350	Right-handed 310
Helix 64	AH1	G	365	374	Right-handed alpha
Helix 65	AH2	H	24	38	Right-handed alpha
Helix 66	AH3	H	41	43	Right-handed 310
Helix 67	AH4	H	54	60	Right-handed 310
Helix 68	AH5	H	72	84	Right-handed alpha
Helix 69	AH6	H	102	113	Right-handed alpha
Helix 70	AH7	H	156	165	Right-handed alpha
Helix 71	AH8	H	176	189	Right-handed alpha
Helix 72	AH9	H	214	226	Right-handed alpha
Helix 73	AI1	H	228	234	Right-handed alpha
Helix 74	AI2	H	257	270	Right-handed alpha
Helix 75	AI3	I	14	17	Right-handed 310
Helix 76	AI4	I	18	30	Right-handed alpha
Helix 77	AI5	I	76	81	Right-handed alpha
Helix 78	AI6	I	103	110	Right-handed alpha
Helix 79	AI7	I	116	124	Right-handed alpha
Helix 80	AI8	I	130	144	Right-handed alpha
Helix 81	AI9	I	147	157	Right-handed alpha
Helix 82	AJ1	I	160	182	Right-handed alpha

There are 17 sheets in PDB entry 8YS5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	14	first strand
Strand 2	D	71	73	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	38	first strand
Strand 2	D	46	50	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	7	first strand
Strand 2	A	176	180	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	26	first strand
Strand 2	A	49	52	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	77	first strand
Strand 2	A	99	103	parallel
Strand 3	A	163	166	parallel
Strand 4	A	137	138	parallel
Strand 5	A	311	313	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	228	first strand
Strand 2	H	64	67	parallel
Strand 3	H	45	49	parallel
Strand 4	H	88	94	parallel
Strand 5	H	117	122	parallel
Strand 6	H	194	199	parallel
Strand 7	H	168	173	parallel
Strand 8	H	247	250	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	270	first strand
Strand 2	A	304	309	anti-parallel
Strand 3	A	277	278	parallel
Strand 4	A	329	333	parallel
Strand 5	A	353	355	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	247	251	first strand
Strand 2	C	168	173	anti-parallel
Strand 3	C	194	199	parallel
Strand 4	C	118	122	parallel
Strand 5	C	88	94	parallel
Strand 6	C	45	49	parallel
Strand 7	C	64	67	parallel
Strand 8	G	227	228	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	126	first strand
Strand 2	C	132	133	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	227	first strand
Strand 2	C	244	245	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	38	first strand
Strand 2	B	47	55	anti-parallel
Strand 3	B	3	10	anti-parallel
Strand 4	B	69	74	parallel
Strand 5	B	87	95	parallel
Strand 6	B	113	114	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	14	first strand
Strand 2	F	71	73	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	34	38	first strand
Strand 2	F	46	50	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2	7	first strand
Strand 2	G	176	181	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	49	51	first strand
Strand 2	G	23	25	parallel
Strand 3	G	73	77	parallel
Strand 4	G	99	103	parallel
Strand 5	G	163	166	parallel
Strand 6	G	137	138	parallel
Strand 7	G	311	313	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	267	270	first strand
Strand 2	G	304	309	anti-parallel
Strand 3	G	277	278	parallel
Strand 4	G	329	333	parallel
Strand 5	G	353	355	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	32	38	first strand
Strand 2	I	47	55	anti-parallel
Strand 3	I	3	10	anti-parallel
Strand 4	I	69	74	parallel
Strand 5	I	87	95	parallel
Strand 6	I	113	114	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YS5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YS5