Analysis of interatomic Contacts of Structural Units in PDB entry:
8YS8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YS8 entry

There are 2 chains in PDB entry 8YS8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 8ASP 725
B
 GLN 8ASP 725
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 67 helices in PDB entry 8YS8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 58Right-handed alpha
Helix 2
AA2
A
59 64Right-handed alpha
Helix 3
AA3
A
68 95Right-handed alpha
Helix 4
AA4
A
102 108Right-handed alpha
Helix 5
AA5
A
110 120Right-handed alpha
Helix 6
AA6
A
130 148Right-handed alpha
Helix 7
AA7
A
169 196Right-handed alpha
Helix 8
AA8
A
199 205Right-handed 310
Helix 9
AA9
A
206 225Right-handed alpha
Helix 10
AB1
A
225 230Right-handed alpha
Helix 11
AB2
A
242 252Right-handed alpha
Helix 12
AB3
A
253 257Right-handed 310
Helix 13
AB4
A
258 282Right-handed alpha
Helix 14
AB5
A
291 308Right-handed alpha
Helix 15
AB6
A
308 313Right-handed alpha
Helix 16
AB7
A
333 339Right-handed alpha
Helix 17
AB8
A
339 364Right-handed alpha
Helix 18
AB9
A
370 388Right-handed alpha
Helix 19
AC1
A
396 406Right-handed alpha
Helix 20
AC2
A
411 427Right-handed alpha
Helix 21
AC3
A
438 447Right-handed alpha
Helix 22
AC4
A
447 453Right-handed alpha
Helix 23
AC5
A
454 456Right-handed 310
Helix 24
AC6
A
457 463Right-handed alpha
Helix 25
AC7
A
467 482Right-handed alpha
Helix 26
AC8
A
484 504Right-handed alpha
Helix 27
AC9
A
548 561Right-handed alpha
Helix 28
AD1
A
563 585Right-handed alpha
Helix 29
AD2
A
612 618Right-handed 310
Helix 30
AD3
A
660 677Right-handed alpha
Helix 31
AD4
A
687 696Right-handed alpha
Helix 32
AD5
A
705 707Right-handed 310
Helix 33
AD6
A
712 725Right-handed alpha
Helix 34
AD7
B
36 43Right-handed alpha
Helix 35
AD8
B
46 58Right-handed alpha
Helix 36
AD9
B
59 64Right-handed alpha
Helix 37
AE1
B
68 95Right-handed alpha
Helix 38
AE2
B
102 109Right-handed alpha
Helix 39
AE3
B
110 120Right-handed alpha
Helix 40
AE4
B
130 148Right-handed alpha
Helix 41
AE5
B
171 196Right-handed alpha
Helix 42
AE6
B
199 204Right-handed 310
Helix 43
AE7
B
207 225Right-handed alpha
Helix 44
AE8
B
225 230Right-handed alpha
Helix 45
AE9
B
241 252Right-handed alpha
Helix 46
AF1
B
253 257Right-handed 310
Helix 47
AF2
B
258 281Right-handed alpha
Helix 48
AF3
B
291 308Right-handed alpha
Helix 49
AF4
B
308 313Right-handed alpha
Helix 50
AF5
B
333 339Right-handed alpha
Helix 51
AF6
B
339 364Right-handed alpha
Helix 52
AF7
B
370 388Right-handed alpha
Helix 53
AF8
B
396 406Right-handed alpha
Helix 54
AF9
B
411 427Right-handed alpha
Helix 55
AG1
B
438 447Right-handed alpha
Helix 56
AG2
B
448 453Right-handed alpha
Helix 57
AG3
B
454 456Right-handed 310
Helix 58
AG4
B
457 463Right-handed alpha
Helix 59
AG5
B
467 482Right-handed alpha
Helix 60
AG6
B
485 504Right-handed alpha
Helix 61
AG7
B
548 561Right-handed alpha
Helix 62
AG8
B
563 585Right-handed alpha
Helix 63
AG9
B
612 618Right-handed 310
Helix 64
AH1
B
660 677Right-handed alpha
Helix 65
AH2
B
687 696Right-handed alpha
Helix 66
AH3
B
705 707Right-handed 310
Helix 67
AH4
B
712 725Right-handed alpha
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There are 6 sheets in PDB entry 8YS8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 13first strand
Strand 2
B
9 13anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
520 522first strand
Strand 2
A
509 514anti-parallel
Strand 3
A
529 530anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
520 522first strand
Strand 2
A
509 514anti-parallel
Strand 3
A
535 539anti-parallel
Strand 4
A
648 652parallel
Strand 5
A
680 684parallel
Strand 6
A
709 710parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
520 522first strand
Strand 2
B
509 514anti-parallel
Strand 3
B
529 530anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
520 522first strand
Strand 2
B
509 514anti-parallel
Strand 3
B
535 539anti-parallel
Strand 4
B
648 652parallel
Strand 5
B
680 684parallel
Strand 6
B
709 710parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
587 588first strand
Strand 2
B
595 596anti-parallel
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