Analysis of interatomic Contacts of Structural Units in PDB entry:
8YSP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YSP entry

There are 2 chains in PDB entry 8YSP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TRP 373
B
 MET 1TRP 373
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 8YSP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 32Right-handed alpha
Helix 2
AA2
A
37 48Right-handed alpha
Helix 3
AA3
A
67 95Right-handed alpha
Helix 4
AA4
A
97 101Right-handed 310
Helix 5
AA5
A
115 121Right-handed alpha
Helix 6
AA6
A
138 140Right-handed 310
Helix 7
AA7
A
141 156Right-handed alpha
Helix 8
AA8
A
171 175Right-handed 310
Helix 9
AA9
A
176 189Right-handed alpha
Helix 10
AB1
A
192 194Right-handed 310
Helix 11
AB2
A
195 209Right-handed alpha
Helix 12
AB3
A
244 246Right-handed 310
Helix 13
AB4
A
264 284Right-handed alpha
Helix 14
AB5
A
287 291Right-handed 310
Helix 15
AB6
A
300 312Right-handed alpha
Helix 16
AB7
A
318 329Right-handed alpha
Helix 17
AB8
A
333 347Right-handed alpha
Helix 18
AB9
B
18 33Right-handed alpha
Helix 19
AC1
B
38 48Right-handed alpha
Helix 20
AC2
B
67 95Right-handed alpha
Helix 21
AC3
B
97 101Right-handed 310
Helix 22
AC4
B
115 121Right-handed alpha
Helix 23
AC5
B
138 140Right-handed 310
Helix 24
AC6
B
141 157Right-handed alpha
Helix 25
AC7
B
171 175Right-handed 310
Helix 26
AC8
B
176 187Right-handed alpha
Helix 27
AC9
B
194 209Right-handed alpha
Helix 28
AD1
B
244 246Right-handed 310
Helix 29
AD2
B
263 283Right-handed alpha
Helix 30
AD3
B
287 289Right-handed 310
Helix 31
AD4
B
300 312Right-handed alpha
Helix 32
AD5
B
318 329Right-handed alpha
Helix 33
AD6
B
331 333Right-handed 310
Helix 34
AD7
B
334 346Right-handed alpha
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There are 6 sheets in PDB entry 8YSP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 135first strand
Strand 2
A
103 107parallel
Strand 3
A
161 169parallel
Strand 4
A
211 219anti-parallel
Strand 5
A
2 10anti-parallel
Strand 6
A
232 240anti-parallel
Strand 7
A
365 372anti-parallel
Strand 8
A
354 361anti-parallel
Strand 9
A
293 296parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 17first strand
Strand 2
A
52 55anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 252first strand
Strand 2
A
257 261anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 135first strand
Strand 2
B
103 107parallel
Strand 3
B
161 169parallel
Strand 4
B
211 219anti-parallel
Strand 5
B
2 10anti-parallel
Strand 6
B
232 240anti-parallel
Strand 7
B
365 372anti-parallel
Strand 8
B
354 361anti-parallel
Strand 9
B
291 296parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 17first strand
Strand 2
B
52 54anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
248 251first strand
Strand 2
B
258 261anti-parallel
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