Analysis of interatomic Contacts of Structural Units in PDB entry:
8YSR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YSR entry

There is 1 chain in PDB entry 8YSR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 0LYS 330
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8YSR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 16Right-handed alpha
Helix 2
AA2
A
19 22Right-handed 310
Helix 3
AA3
A
23 47Right-handed alpha
Helix 4
AA4
A
61 66Right-handed alpha
Helix 5
AA5
A
88 92Right-handed 310
Helix 6
AA6
A
93 105Right-handed alpha
Helix 7
AA7
A
153 157Right-handed 310
Helix 8
AA8
A
163 174Right-handed alpha
Helix 9
AA9
A
176 198Right-handed alpha
Helix 10
AB1
A
199 205Right-handed 310
Helix 11
AB2
A
207 219Right-handed alpha
Helix 12
AB3
A
235 250Right-handed alpha
Helix 13
AB4
A
283 304Right-handed alpha
Helix 14
AB5
A
309 322Right-handed alpha
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There are 4 sheets in PDB entry 8YSR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 59first strand
Strand 2
A
77 85anti-parallel
Strand 3
A
126 133parallel
Strand 4
A
119 123anti-parallel
Strand 5
A
112 114anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 147first strand
Strand 2
A
158 161anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 225first strand
Strand 2
A
232 234anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 256first strand
Strand 2
A
261 266anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il