Analysis of interatomic Contacts of Structural Units in PDB entry:
8YSV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YSV entry

There is 1 chain in PDB entry 8YSV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 476
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 8YSV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 20Right-handed alpha
Helix 2
AA2
A
31 36Right-handed 310
Helix 3
AA3
A
64 80Right-handed alpha
Helix 4
AA4
A
89 94Right-handed alpha
Helix 5
AA5
A
103 119Right-handed alpha
Helix 6
AA6
A
134 142Right-handed alpha
Helix 7
AA7
A
143 146Right-handed 310
Helix 8
AA8
A
147 164Right-handed alpha
Helix 9
AA9
A
176 182Right-handed 310
Helix 10
AB1
A
186 194Right-handed alpha
Helix 11
AB2
A
202 229Right-handed alpha
Helix 12
AB3
A
249 273Right-handed alpha
Helix 13
AB4
A
276 286Right-handed alpha
Helix 14
AB5
A
293 302Right-handed alpha
Helix 15
AB6
A
351 367Right-handed alpha
Helix 16
AB7
A
391 413Right-handed alpha
Helix 17
AB8
A
459 471Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8YSV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 10first strand
Strand 2
A
416 419parallel
Strand 3
A
370 374parallel
Strand 4
A
307 311parallel
Strand 5
A
233 239parallel
Strand 6
A
170 174parallel
Strand 7
A
123 129parallel
Strand 8
A
83 87parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 245first strand
Strand 2
A
316 318parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
342 343first strand
Strand 2
A
349 350anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
442 444first strand
Strand 2
A
456 458anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il