Analysis of interatomic Contacts of Structural Units in PDB entry:
8YSW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YSW entry

There are 4 chains in PDB entry 8YSW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA -4	GLU 410
B	LEU -1	VAL 408
C	LEU -1	VAL 408
D	LEU -1	ARG 53

There are114 helices in PDB entry 8YSW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	0	16	Right-handed alpha
Helix 2	AA2	A	19	27	Right-handed alpha
Helix 3	AA3	A	74	93	Right-handed alpha
Helix 4	AA4	A	106	110	Right-handed 310
Helix 5	AA5	A	111	127	Right-handed alpha
Helix 6	AA6	A	128	130	Right-handed 310
Helix 7	AA7	A	144	160	Right-handed alpha
Helix 8	AA8	A	163	167	Right-handed 310
Helix 9	AA9	A	171	175	Right-handed 310
Helix 10	AB1	A	182	200	Right-handed alpha
Helix 11	AB2	A	214	227	Right-handed alpha
Helix 12	AB3	A	248	254	Right-handed alpha
Helix 13	AB4	A	262	266	Right-handed 310
Helix 14	AB5	A	271	278	Right-handed alpha
Helix 15	AB6	A	296	300	Right-handed 310
Helix 16	AB7	A	314	324	Right-handed alpha
Helix 17	AB8	A	330	335	Right-handed alpha
Helix 18	AB9	A	335	352	Right-handed alpha
Helix 19	AC1	A	356	382	Right-handed alpha
Helix 20	AC2	A	385	405	Right-handed alpha
Helix 21	AC3	B	0	17	Right-handed alpha
Helix 22	AC4	B	19	27	Right-handed alpha
Helix 23	AC5	B	74	92	Right-handed alpha
Helix 24	AC6	B	106	110	Right-handed 310
Helix 25	AC7	B	111	127	Right-handed alpha
Helix 26	AC8	B	128	130	Right-handed 310
Helix 27	AC9	B	144	160	Right-handed alpha
Helix 28	AD1	B	163	167	Right-handed 310
Helix 29	AD2	B	171	175	Right-handed 310
Helix 30	AD3	B	182	199	Right-handed alpha
Helix 31	AD4	B	202	205	Right-handed 310
Helix 32	AD5	B	214	227	Right-handed alpha
Helix 33	AD6	B	248	253	Right-handed alpha
Helix 34	AD7	B	262	266	Right-handed 310
Helix 35	AD8	B	271	278	Right-handed alpha
Helix 36	AD9	B	293	298	Right-handed alpha
Helix 37	AE1	B	314	324	Right-handed alpha
Helix 38	AE2	B	330	335	Right-handed alpha
Helix 39	AE3	B	336	352	Right-handed alpha
Helix 40	AE4	B	356	383	Right-handed alpha
Helix 41	AE5	B	385	405	Right-handed alpha
Helix 42	AE6	C	0	17	Right-handed alpha
Helix 43	AE7	C	19	27	Right-handed alpha
Helix 44	AE8	C	74	92	Right-handed alpha
Helix 45	AE9	C	106	110	Right-handed 310
Helix 46	AF1	C	111	127	Right-handed alpha
Helix 47	AF2	C	128	130	Right-handed 310
Helix 48	AF3	C	144	160	Right-handed alpha
Helix 49	AF4	C	163	167	Right-handed 310
Helix 50	AF5	C	171	175	Right-handed 310
Helix 51	AF6	C	182	199	Right-handed alpha
Helix 52	AF7	C	214	227	Right-handed alpha
Helix 53	AF8	C	248	256	Right-handed alpha
Helix 54	AF9	C	262	266	Right-handed 310
Helix 55	AG1	C	271	277	Right-handed alpha
Helix 56	AG2	C	314	323	Right-handed alpha
Helix 57	AG3	C	330	335	Right-handed alpha
Helix 58	AG4	C	336	352	Right-handed alpha
Helix 59	AG5	C	356	382	Right-handed alpha
Helix 60	AG6	C	385	405	Right-handed alpha
Helix 61	AG7	D	0	17	Right-handed alpha
Helix 62	AG8	D	19	27	Right-handed alpha
Helix 63	AG9	D	74	93	Right-handed alpha
Helix 64	AH1	D	106	110	Right-handed 310
Helix 65	AH2	D	111	127	Right-handed alpha
Helix 66	AH3	D	128	130	Right-handed 310
Helix 67	AH4	D	144	160	Right-handed alpha
Helix 68	AH5	D	163	167	Right-handed 310
Helix 69	AH6	D	171	175	Right-handed 310
Helix 70	AH7	D	182	196	Right-handed alpha
Helix 71	AH8	D	314	324	Right-handed alpha
Helix 72	AH9	D	330	335	Right-handed alpha
Helix 73	AI1	D	336	352	Right-handed alpha
Helix 74	AI2	D	356	383	Right-handed alpha
Helix 75	AI3	D	385	405	Right-handed alpha
Helix 76	AI4	E	0	16	Right-handed alpha
Helix 77	AI5	E	19	27	Right-handed alpha
Helix 78	AI6	E	74	92	Right-handed alpha
Helix 79	AI7	E	106	110	Right-handed 310
Helix 80	AI8	E	111	127	Right-handed alpha
Helix 81	AI9	E	128	130	Right-handed 310
Helix 82	AJ1	E	144	160	Right-handed alpha
Helix 83	AJ2	E	163	167	Right-handed 310
Helix 84	AJ3	E	171	175	Right-handed 310
Helix 85	AJ4	E	182	199	Right-handed alpha
Helix 86	AJ5	E	214	227	Right-handed alpha
Helix 87	AJ6	E	248	255	Right-handed alpha
Helix 88	AJ7	E	262	266	Right-handed 310
Helix 89	AJ8	E	271	278	Right-handed alpha
Helix 90	AJ9	E	296	300	Right-handed 310
Helix 91	AK1	E	314	324	Right-handed alpha
Helix 92	AK2	E	330	335	Right-handed alpha
Helix 93	AK3	E	336	352	Right-handed alpha
Helix 94	AK4	E	356	383	Right-handed alpha
Helix 95	AK5	E	385	405	Right-handed alpha
Helix 96	AK6	F	0	17	Right-handed alpha
Helix 97	AK7	F	19	27	Right-handed alpha
Helix 98	AK8	F	74	92	Right-handed alpha
Helix 99	AK9	F	106	110	Right-handed 310
Helix 100	AL1	F	111	127	Right-handed alpha
Helix 101	AL2	F	128	130	Right-handed 310
Helix 102	AL3	F	144	160	Right-handed alpha
Helix 103	AL4	F	163	167	Right-handed 310
Helix 104	AL5	F	171	175	Right-handed 310
Helix 105	AL6	F	182	198	Right-handed alpha
Helix 106	AL7	F	214	227	Right-handed alpha
Helix 107	AL8	F	248	254	Right-handed alpha
Helix 108	AL9	F	262	266	Right-handed 310
Helix 109	AM1	F	271	277	Right-handed alpha
Helix 110	AM2	F	314	324	Right-handed alpha
Helix 111	AM3	F	330	335	Right-handed alpha
Helix 112	AM4	F	336	352	Right-handed alpha
Helix 113	AM5	F	356	383	Right-handed alpha
Helix 114	AM6	F	385	405	Right-handed alpha

There are 18 sheets in PDB entry 8YSW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	40	first strand
Strand 2	A	46	55	anti-parallel
Strand 3	A	97	104	anti-parallel
Strand 4	A	67	70	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	40	first strand
Strand 2	A	46	55	anti-parallel
Strand 3	A	97	104	anti-parallel
Strand 4	A	63	64	parallel
Strand 5	A	135	136	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	242	first strand
Strand 2	A	230	235	anti-parallel
Strand 3	A	207	211	parallel
Strand 4	A	282	285	parallel
Strand 5	A	304	306	parallel
Strand 6	A	327	329	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	40	first strand
Strand 2	B	46	55	anti-parallel
Strand 3	B	97	104	anti-parallel
Strand 4	B	67	70	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	40	first strand
Strand 2	B	46	55	anti-parallel
Strand 3	B	97	104	anti-parallel
Strand 4	B	63	64	parallel
Strand 5	B	135	136	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	242	first strand
Strand 2	B	230	236	anti-parallel
Strand 3	B	207	211	parallel
Strand 4	B	280	285	parallel
Strand 5	B	302	306	parallel
Strand 6	B	327	329	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	40	first strand
Strand 2	C	46	55	anti-parallel
Strand 3	C	97	104	anti-parallel
Strand 4	C	67	70	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	40	first strand
Strand 2	C	46	55	anti-parallel
Strand 3	C	97	104	anti-parallel
Strand 4	C	63	64	parallel
Strand 5	C	135	136	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	240	242	first strand
Strand 2	C	230	235	anti-parallel
Strand 3	C	207	211	parallel
Strand 4	C	279	285	parallel
Strand 5	C	301	306	parallel
Strand 6	C	327	329	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	40	first strand
Strand 2	D	46	55	anti-parallel
Strand 3	D	97	104	anti-parallel
Strand 4	D	67	70	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	40	first strand
Strand 2	D	46	55	anti-parallel
Strand 3	D	97	104	anti-parallel
Strand 4	D	63	64	parallel
Strand 5	D	135	136	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	305	306	first strand
Strand 2	D	328	329	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	31	40	first strand
Strand 2	E	46	55	anti-parallel
Strand 3	E	97	104	anti-parallel
Strand 4	E	67	70	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	31	40	first strand
Strand 2	E	46	55	anti-parallel
Strand 3	E	97	104	anti-parallel
Strand 4	E	63	64	parallel
Strand 5	E	135	136	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	240	242	first strand
Strand 2	E	230	235	anti-parallel
Strand 3	E	207	211	parallel
Strand 4	E	280	285	parallel
Strand 5	E	302	306	parallel
Strand 6	E	327	329	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	31	40	first strand
Strand 2	F	46	55	anti-parallel
Strand 3	F	97	103	anti-parallel
Strand 4	F	67	69	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	31	40	first strand
Strand 2	F	46	55	anti-parallel
Strand 3	F	97	103	anti-parallel
Strand 4	F	63	64	parallel
Strand 5	F	135	136	parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	240	242	first strand
Strand 2	F	230	235	anti-parallel
Strand 3	F	207	210	parallel
Strand 4	F	279	284	parallel
Strand 5	F	301	306	parallel
Strand 6	F	327	329	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YSW

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YSW