Analysis of interatomic Contacts of Structural Units in PDB entry:
8YSZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YSZ entry

There are 4 chains in PDB entry 8YSZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	CYS 9	THR 62
A	GLY 27	ASP 946
B	CYS 335	ASP 946
C	SER 5	THR 62

There are 28 helices in PDB entry 8YSZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	11	22	Right-handed alpha
Helix 2	AA2	D	52	57	Right-handed alpha
Helix 3	AA3	A	43	48	Right-handed 310
Helix 4	AA4	A	69	74	Right-handed 310
Helix 5	AA5	A	159	164	Right-handed alpha
Helix 6	AA6	A	175	179	Right-handed 310
Helix 7	AA7	A	282	296	Right-handed alpha
Helix 8	AA8	A	341	343	Right-handed 310
Helix 9	AA9	A	350	356	Right-handed alpha
Helix 10	AB1	A	377	386	Right-handed alpha
Helix 11	AB2	A	462	472	Right-handed alpha
Helix 12	AB3	A	474	478	Right-handed 310
Helix 13	AB4	A	523	525	Right-handed 310
Helix 14	AB5	A	666	670	Right-handed 310
Helix 15	AB6	A	903	908	Right-handed alpha
Helix 16	AB7	B	354	358	Right-handed 310
Helix 17	AB8	B	376	386	Right-handed alpha
Helix 18	AB9	B	405	410	Right-handed 310
Helix 19	AC1	B	421	423	Right-handed 310
Helix 20	AC2	B	462	473	Right-handed alpha
Helix 21	AC3	B	476	480	Right-handed 310
Helix 22	AC4	B	523	525	Right-handed 310
Helix 23	AC5	B	721	741	Right-handed alpha
Helix 24	AC6	B	903	907	Right-handed 310
Helix 25	AC7	C	10	22	Right-handed alpha
Helix 26	AC8	C	41	47	Right-handed alpha
Helix 27	AC9	C	52	57	Right-handed alpha
Helix 28	AD1	C	58	60	Right-handed 310

There are 24 sheets in PDB entry 8YSZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	41	first strand
Strand 2	A	53	63	parallel
Strand 3	A	83	84	parallel
Strand 4	A	108	109	parallel
Strand 5	A	138	139	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	41	first strand
Strand 2	A	53	63	parallel
Strand 3	A	87	91	parallel
Strand 4	A	118	123	parallel
Strand 5	A	143	147	parallel
Strand 6	A	171	173	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	199	first strand
Strand 2	A	206	207	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	243	first strand
Strand 2	A	252	255	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	260	first strand
Strand 2	A	263	265	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	281	first strand
Strand 2	A	273	275	anti-parallel
Strand 3	A	310	312	parallel
Strand 4	A	305	307	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	348	first strand
Strand 2	A	366	369	parallel
Strand 3	A	395	398	parallel
Strand 4	A	425	430	parallel
Strand 5	A	452	456	parallel
Strand 6	A	483	484	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	502	507	first strand
Strand 2	A	511	516	anti-parallel
Strand 3	A	578	581	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	557	561	first strand
Strand 2	A	527	536	anti-parallel
Strand 3	A	593	597	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	557	561	first strand
Strand 2	A	527	536	anti-parallel
Strand 3	A	588	590	anti-parallel
Strand 4	A	614	616	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	626	634	first strand
Strand 2	A	637	643	anti-parallel
Strand 3	A	806	808	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	799	801	first strand
Strand 2	A	654	660	anti-parallel
Strand 3	A	819	825	anti-parallel
Strand 4	A	838	841	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	883	884	first strand
Strand 2	A	927	928	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	886	887	first strand
Strand 2	A	897	898	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	919	923	first strand
Strand 2	A	940	944	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	346	first strand
Strand 2	B	361	367	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	390	393	first strand
Strand 2	B	414	417	parallel
Strand 3	B	447	448	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	395	398	first strand
Strand 2	B	425	430	parallel
Strand 3	B	452	455	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	502	507	first strand
Strand 2	B	512	516	anti-parallel
Strand 3	B	577	580	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	557	561	first strand
Strand 2	B	527	536	anti-parallel
Strand 3	B	588	597	anti-parallel
Strand 4	B	613	616	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	629	634	first strand
Strand 2	B	637	641	anti-parallel
Strand 3	B	806	809	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	798	801	first strand
Strand 2	B	655	660	anti-parallel
Strand 3	B	817	825	anti-parallel
Strand 4	B	834	835	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	798	801	first strand
Strand 2	B	655	660	anti-parallel
Strand 3	B	817	825	anti-parallel
Strand 4	B	838	843	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	857	861	first strand
Strand 2	B	867	871	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YSZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YSZ