Analysis of interatomic Contacts of Structural Units in PDB entry:
8YTC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YTC entry

There are 2 chains in PDB entry 8YTC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 46SER 221
B
 PRO 46SER 221
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8YTC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 54Right-handed alpha
Helix 2
AA2
A
79 84Right-handed alpha
Helix 3
AA3
A
109 123Right-handed alpha
Helix 4
AA4
A
126 131Right-handed alpha
Helix 5
AA5
A
132 138Right-handed 310
Helix 6
AA6
A
149 158Right-handed alpha
Helix 7
AA7
A
165 170Right-handed alpha
Helix 8
AA8
A
174 183Right-handed alpha
Helix 9
AA9
A
213 217Right-handed 310
Helix 10
AB1
B
49 54Right-handed alpha
Helix 11
AB2
B
79 84Right-handed alpha
Helix 12
AB3
B
109 123Right-handed alpha
Helix 13
AB4
B
126 131Right-handed alpha
Helix 14
AB5
B
132 138Right-handed 310
Helix 15
AB6
B
149 158Right-handed alpha
Helix 16
AB7
B
165 170Right-handed alpha
Helix 17
AB8
B
174 183Right-handed alpha
Helix 18
AB9
B
213 217Right-handed 310
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There are 2 sheets in PDB entry 8YTC. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 204first strand
Strand 2
A
209 210anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 204first strand
Strand 2
B
209 210anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il