Analysis of interatomic Contacts of Structural Units in PDB entry:
8YTU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YTU entry

There are 3 chains in PDB entry 8YTU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 45VAL 294
B
 THR 45HIS 300
C
 ALA 44HIS 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 31 helices in PDB entry 8YTU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
101 104Right-handed 310
Helix 2
AA2
A
105 114Right-handed alpha
Helix 3
AA3
A
130 147Right-handed alpha
Helix 4
AA4
A
150 155Right-handed alpha
Helix 5
AA5
A
168 181Right-handed alpha
Helix 6
AA6
A
222 230Right-handed alpha
Helix 7
AA7
A
246 250Right-handed 310
Helix 8
AA8
A
252 268Right-handed alpha
Helix 9
AA9
A
270 272Right-handed 310
Helix 10
AB1
A
273 278Right-handed alpha
Helix 11
AB2
B
101 104Right-handed 310
Helix 12
AB3
B
105 114Right-handed alpha
Helix 13
AB4
B
130 148Right-handed alpha
Helix 14
AB5
B
150 155Right-handed alpha
Helix 15
AB6
B
168 181Right-handed alpha
Helix 16
AB7
B
222 230Right-handed alpha
Helix 17
AB8
B
246 250Right-handed 310
Helix 18
AB9
B
252 268Right-handed alpha
Helix 19
AC1
B
270 272Right-handed 310
Helix 20
AC2
B
273 278Right-handed alpha
Helix 21
AC3
B
294 298Right-handed 310
Helix 22
AC4
C
101 104Right-handed 310
Helix 23
AC5
C
105 114Right-handed alpha
Helix 24
AC6
C
130 146Right-handed alpha
Helix 25
AC7
C
150 155Right-handed alpha
Helix 26
AC8
C
168 181Right-handed alpha
Helix 27
AC9
C
222 230Right-handed alpha
Helix 28
AD1
C
246 250Right-handed 310
Helix 29
AD2
C
252 268Right-handed alpha
Helix 30
AD3
C
270 279Right-handed 310
Helix 31
AD4
C
294 298Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 8YTU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 68first strand
Strand 2
A
78 83anti-parallel
Strand 3
A
118 122anti-parallel
Strand 4
A
89 95parallel
Strand 5
A
157 167parallel
Strand 6
A
186 190parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 211first strand
Strand 2
A
235 240parallel
Strand 3
A
285 290anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 68first strand
Strand 2
B
78 83anti-parallel
Strand 3
B
118 122anti-parallel
Strand 4
B
89 95parallel
Strand 5
B
157 167parallel
Strand 6
B
186 190parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 211first strand
Strand 2
B
235 240parallel
Strand 3
B
285 290anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
64 68first strand
Strand 2
C
77 83anti-parallel
Strand 3
C
118 123anti-parallel
Strand 4
C
89 95parallel
Strand 5
C
157 167parallel
Strand 6
C
186 190parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
206 211first strand
Strand 2
C
235 240parallel
Strand 3
C
285 290anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il