Analysis of interatomic Contacts of Structural Units in PDB entry:
8YTV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YTV entry

There are 2 chains in PDB entry 8YTV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 44GLU 296
B
 GLY 48GLU 296
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8YTV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
101 104Right-handed 310
Helix 2
AA2
A
105 115Right-handed alpha
Helix 3
AA3
A
130 148Right-handed alpha
Helix 4
AA4
A
150 155Right-handed alpha
Helix 5
AA5
A
168 181Right-handed alpha
Helix 6
AA6
A
222 230Right-handed alpha
Helix 7
AA7
A
246 250Right-handed 310
Helix 8
AA8
A
252 268Right-handed alpha
Helix 9
AA9
A
270 272Right-handed 310
Helix 10
AB1
A
273 278Right-handed alpha
Helix 11
AB2
B
54 58Right-handed 310
Helix 12
AB3
B
101 104Right-handed 310
Helix 13
AB4
B
105 114Right-handed alpha
Helix 14
AB5
B
130 148Right-handed alpha
Helix 15
AB6
B
150 155Right-handed alpha
Helix 16
AB7
B
168 181Right-handed alpha
Helix 17
AB8
B
222 229Right-handed alpha
Helix 18
AB9
B
252 268Right-handed alpha
Helix 19
AC1
B
270 272Right-handed 310
Helix 20
AC2
B
273 279Right-handed alpha
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There are 4 sheets in PDB entry 8YTV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 68first strand
Strand 2
A
78 83anti-parallel
Strand 3
A
118 122anti-parallel
Strand 4
A
89 95parallel
Strand 5
A
157 167parallel
Strand 6
A
186 190parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 211first strand
Strand 2
A
235 240parallel
Strand 3
A
285 290anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 68first strand
Strand 2
B
77 83anti-parallel
Strand 3
B
118 123anti-parallel
Strand 4
B
89 95parallel
Strand 5
B
157 167parallel
Strand 6
B
186 190parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 211first strand
Strand 2
B
235 240parallel
Strand 3
B
285 290anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il