Analysis of interatomic Contacts of Structural Units in PDB entry:
8YTY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YTY entry

There is 1 chain in PDB entry 8YTY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 40GLU 290
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 9 helices in PDB entry 8YTY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
95 100Right-handed 310
Helix 2
AA2
A
101 108Right-handed alpha
Helix 3
AA3
A
124 142Right-handed alpha
Helix 4
AA4
A
144 149Right-handed alpha
Helix 5
AA5
A
162 175Right-handed alpha
Helix 6
AA6
A
218 226Right-handed alpha
Helix 7
AA7
A
241 245Right-handed 310
Helix 8
AA8
A
247 262Right-handed alpha
Helix 9
AA9
A
265 273Right-handed 310
Back to top of page

There is 1 sheet (AA1) in PDB entry 8YTY.

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 62first strand
Strand 2
A
72 77anti-parallel
Strand 3
A
112 116anti-parallel
Strand 4
A
83 89parallel
Strand 5
A
151 161parallel
Strand 6
A
180 186parallel
Strand 7
A
202 207parallel
Strand 8
A
230 235parallel
Strand 9
A
280 285anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il