Analysis of interatomic Contacts of Structural Units in PDB entry:
8YU7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YU7 entry

There are 4 chains in PDB entry 8YU7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 26LEU 305
B
 GLU 26LEU 305
C
 GLU 26LEU 305
D
 GLU 26LEU 305
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 8YU7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 64Right-handed alpha
Helix 2
AA2
A
72 100Right-handed alpha
Helix 3
AA3
A
106 140Right-handed alpha
Helix 4
AA4
A
145 175Right-handed alpha
Helix 5
AA5
A
192 208Right-handed alpha
Helix 6
AA6
A
208 226Right-handed alpha
Helix 7
AA7
A
232 237Right-handed alpha
Helix 8
AA8
A
238 251Right-handed alpha
Helix 9
AA9
A
252 267Right-handed alpha
Helix 10
AB1
A
274 305Right-handed alpha
Helix 11
AB2
B
36 64Right-handed alpha
Helix 12
AB3
B
72 100Right-handed alpha
Helix 13
AB4
B
106 140Right-handed alpha
Helix 14
AB5
B
145 175Right-handed alpha
Helix 15
AB6
B
192 208Right-handed alpha
Helix 16
AB7
B
208 226Right-handed alpha
Helix 17
AB8
B
232 237Right-handed alpha
Helix 18
AB9
B
238 251Right-handed alpha
Helix 19
AC1
B
252 267Right-handed alpha
Helix 20
AC2
B
274 305Right-handed alpha
Helix 21
AC3
C
36 64Right-handed alpha
Helix 22
AC4
C
72 100Right-handed alpha
Helix 23
AC5
C
106 140Right-handed alpha
Helix 24
AC6
C
145 175Right-handed alpha
Helix 25
AC7
C
192 208Right-handed alpha
Helix 26
AC8
C
208 226Right-handed alpha
Helix 27
AC9
C
232 237Right-handed alpha
Helix 28
AD1
C
238 251Right-handed alpha
Helix 29
AD2
C
252 267Right-handed alpha
Helix 30
AD3
C
274 305Right-handed alpha
Helix 31
AD4
D
36 64Right-handed alpha
Helix 32
AD5
D
72 100Right-handed alpha
Helix 33
AD6
D
106 140Right-handed alpha
Helix 34
AD7
D
145 175Right-handed alpha
Helix 35
AD8
D
192 208Right-handed alpha
Helix 36
AD9
D
208 226Right-handed alpha
Helix 37
AE1
D
232 237Right-handed alpha
Helix 38
AE2
D
238 251Right-handed alpha
Helix 39
AE3
D
252 267Right-handed alpha
Helix 40
AE4
D
274 305Right-handed alpha
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There are 4 sheets in PDB entry 8YU7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 178first strand
Strand 2
A
185 186anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 178first strand
Strand 2
B
185 186anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
177 178first strand
Strand 2
C
185 186anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
177 178first strand
Strand 2
D
185 186anti-parallel
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