Analysis of interatomic Contacts of Structural Units in PDB entry:
8YUE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YUE entry

There are 2 chains in PDB entry 8YUE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 292LYS 671
B
 SER 291TYR 680
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8YUE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
292 347Right-handed alpha
Helix 2
AA2
A
359 363Right-handed 310
Helix 3
AA3
A
407 424Right-handed alpha
Helix 4
AA4
A
439 445Right-handed alpha
Helix 5
AA5
A
452 469Right-handed alpha
Helix 6
AA6
A
524 537Right-handed alpha
Helix 7
AA7
A
549 553Right-handed 310
Helix 8
AA8
A
600 616Right-handed alpha
Helix 9
AA9
A
621 624Right-handed 310
Helix 10
AB1
A
625 632Right-handed alpha
Helix 11
AB2
A
633 635Right-handed 310
Helix 12
AB3
A
653 670Right-handed alpha
Helix 13
AB4
B
292 347Right-handed alpha
Helix 14
AB5
B
407 424Right-handed alpha
Helix 15
AB6
B
439 444Right-handed alpha
Helix 16
AB7
B
452 472Right-handed alpha
Helix 17
AB8
B
524 540Right-handed alpha
Helix 18
AB9
B
602 615Right-handed alpha
Helix 19
AC1
B
625 631Right-handed alpha
Helix 20
AC2
B
631 637Right-handed alpha
Helix 21
AC3
B
650 652Right-handed 310
Helix 22
AC4
B
653 669Right-handed alpha
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There are 8 sheets in PDB entry 8YUE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 402first strand
Strand 2
A
349 355parallel
Strand 3
A
640 647parallel
Strand 4
A
428 431parallel
Strand 5
A
570 580parallel
Strand 6
A
554 565anti-parallel
Strand 7
A
482 485anti-parallel
Strand 8
A
488 491anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
473 474first strand
Strand 2
A
554 565anti-parallel
Strand 3
A
477 479anti-parallel
Strand 4
A
520 521anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 371first strand
Strand 2
A
377 381anti-parallel
Strand 3
A
395 397anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
502 505first strand
Strand 2
A
508 514anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
400 402first strand
Strand 2
B
349 355parallel
Strand 3
B
640 647parallel
Strand 4
B
428 433parallel
Strand 5
B
574 580parallel
Strand 6
B
554 557anti-parallel
Strand 7
B
481 484anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
400 402first strand
Strand 2
B
349 355parallel
Strand 3
B
640 647parallel
Strand 4
B
428 433parallel
Strand 5
B
574 580parallel
Strand 6
B
559 562anti-parallel
Strand 7
B
476 479anti-parallel
Strand 8
B
520 521anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
369 372first strand
Strand 2
B
377 381anti-parallel
Strand 3
B
395 397anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
502 504first strand
Strand 2
B
512 514anti-parallel
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