Analysis of interatomic Contacts of Structural Units in PDB entry:
8YV5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YV5 entry

There are 2 chains in PDB entry 8YV5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLY 3LYS 175
A
 GLY 3MET 174
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8YV5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
23 38Right-handed alpha
Helix 2
AA2
B
67 73Right-handed 310
Helix 3
AA3
B
74 92Right-handed alpha
Helix 4
AA4
B
126 140Right-handed alpha
Helix 5
AA5
B
143 158Right-handed alpha
Helix 6
AA6
B
159 173Right-handed alpha
Helix 7
AA7
A
23 38Right-handed alpha
Helix 8
AA8
A
66 70Right-handed alpha
Helix 9
AA9
A
71 73Right-handed 310
Helix 10
AB1
A
74 92Right-handed alpha
Helix 11
AB2
A
126 140Right-handed alpha
Helix 12
AB3
A
143 158Right-handed alpha
Helix 13
AB4
A
159 173Right-handed alpha
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There are 6 sheets in PDB entry 8YV5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 11first strand
Strand 2
B
14 19anti-parallel
Strand 3
B
55 59anti-parallel
Strand 4
B
46 50anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 65first strand
Strand 2
B
105 107anti-parallel
Strand 3
B
111 113anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 94first strand
Strand 2
B
120 121anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 11first strand
Strand 2
A
14 19anti-parallel
Strand 3
A
55 59anti-parallel
Strand 4
A
46 50anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 65first strand
Strand 2
A
105 107anti-parallel
Strand 3
A
111 113anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 94first strand
Strand 2
A
120 121anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il