Analysis of interatomic Contacts of Structural Units in PDB entry:
8YVH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YVH entry

There are 2 chains in PDB entry 8YVH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TRP 293
B
 PRO 7TRP 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 8YVH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 28Right-handed alpha
Helix 2
AA2
A
38 49Right-handed 310
Helix 3
AA3
A
55 62Right-handed alpha
Helix 4
AA4
A
72 81Right-handed alpha
Helix 5
AA5
A
98 112Right-handed alpha
Helix 6
AA6
A
125 129Right-handed 310
Helix 7
AA7
A
141 153Right-handed alpha
Helix 8
AA8
A
154 156Right-handed 310
Helix 9
AA9
A
166 196Right-handed alpha
Helix 10
AB1
A
199 227Right-handed alpha
Helix 11
AB2
A
235 253Right-handed alpha
Helix 12
AB3
A
259 272Right-handed alpha
Helix 13
AB4
A
278 281Right-handed 310
Helix 14
AB5
A
282 288Right-handed alpha
Helix 15
AB6
B
15 29Right-handed alpha
Helix 16
AB7
B
38 43Right-handed 310
Helix 17
AB8
B
45 49Right-handed 310
Helix 18
AB9
B
55 62Right-handed alpha
Helix 19
AC1
B
72 80Right-handed alpha
Helix 20
AC2
B
98 112Right-handed alpha
Helix 21
AC3
B
125 129Right-handed 310
Helix 22
AC4
B
141 154Right-handed alpha
Helix 23
AC5
B
166 196Right-handed alpha
Helix 24
AC6
B
199 227Right-handed alpha
Helix 25
AC7
B
235 253Right-handed alpha
Helix 26
AC8
B
259 272Right-handed alpha
Helix 27
AC9
B
278 281Right-handed 310
Helix 28
AD1
B
282 288Right-handed alpha
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There are 2 sheets in PDB entry 8YVH. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 52first strand
Strand 2
A
31 35parallel
Strand 3
A
8 12parallel
Strand 4
A
65 68parallel
Strand 5
A
90 93parallel
Strand 6
A
116 122parallel
Strand 7
A
135 139anti-parallel
Strand 8
A
157 162parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 52first strand
Strand 2
B
31 35parallel
Strand 3
B
8 12parallel
Strand 4
B
65 68parallel
Strand 5
B
90 93parallel
Strand 6
B
116 122parallel
Strand 7
B
135 139anti-parallel
Strand 8
B
157 162parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il