Analysis of interatomic Contacts of Structural Units in PDB entry:
8YVO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YVO entry

There are 4 chains in PDB entry 8YVO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 23ALA 149
B
 GLU 23ALA 149
C
 ALA 2639GLY 2707
D
 ALA 2639GLY 2707
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 8YVO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
81 84Right-handed 310
Helix 2
AA2
A
93 95Right-handed 310
Helix 3
AA3
A
106 110Right-handed 310
Helix 4
AA4
A
125 129Right-handed 310
Helix 5
AA5
A
131 135Right-handed 310
Helix 6
AA6
B
81 84Right-handed 310
Helix 7
AA7
B
93 95Right-handed 310
Helix 8
AA8
B
106 110Right-handed 310
Helix 9
AA9
B
125 129Right-handed 310
Helix 10
AB1
B
131 135Right-handed 310
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There are 12 sheets in PDB entry 8YVO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 29first strand
Strand 2
A
40 46anti-parallel
Strand 3
A
97 102anti-parallel
Strand 4
A
87 92anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 35first strand
Strand 2
A
142 147parallel
Strand 3
A
111 117anti-parallel
Strand 4
A
52 58anti-parallel
Strand 5
A
65 71anti-parallel
Strand 6
A
77 79anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 35first strand
Strand 2
A
142 147parallel
Strand 3
A
111 117anti-parallel
Strand 4
A
137 138anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 123first strand
Strand 2
C
2665 2669parallel
Strand 3
C
2672 2676anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 29first strand
Strand 2
B
40 46anti-parallel
Strand 3
B
97 102anti-parallel
Strand 4
B
87 92anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 35first strand
Strand 2
B
142 147parallel
Strand 3
B
111 117anti-parallel
Strand 4
B
52 58anti-parallel
Strand 5
B
64 71anti-parallel
Strand 6
B
77 79anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 35first strand
Strand 2
B
142 147parallel
Strand 3
B
111 117anti-parallel
Strand 4
B
137 138anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 123first strand
Strand 2
D
2665 2669parallel
Strand 3
D
2672 2676anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2645 2649first strand
Strand 2
C
2652 2656anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2687 2691first strand
Strand 2
C
2694 2698anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2645 2649first strand
Strand 2
D
2652 2656anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2687 2691first strand
Strand 2
D
2694 2698anti-parallel
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