Analysis of interatomic Contacts of Structural Units in PDB entry:
8YVR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YVR entry

There is 1 chain in PDB entry 8YVR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 23	PRO 659

There are 71 helices in PDB entry 8YVR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	39	Right-handed 310
Helix 2	AA2	A	73	76	Right-handed 310
Helix 3	AA3	A	99	103	Right-handed 310
Helix 4	AA4	A	260	276	Right-handed alpha
Helix 5	AA5	A	276	292	Right-handed alpha
Helix 6	AA6	A	301	318	Right-handed alpha
Helix 7	AA7	A	335	340	Right-handed 310
Helix 8	AA8	A	342	349	Right-handed alpha
Helix 9	AA9	A	349	357	Right-handed alpha
Helix 10	AB1	A	357	370	Right-handed alpha
Helix 11	AB2	A	371	382	Right-handed alpha
Helix 12	AB3	A	406	411	Right-handed alpha
Helix 13	AB4	A	413	430	Right-handed alpha
Helix 14	AB5	A	431	438	Right-handed alpha
Helix 15	AB6	A	438	454	Right-handed alpha
Helix 16	AB7	A	480	502	Right-handed alpha
Helix 17	AB8	A	507	516	Right-handed alpha
Helix 18	AB9	A	541	546	Right-handed 310
Helix 19	AC1	A	554	566	Right-handed alpha
Helix 20	AC2	A	567	569	Right-handed 310
Helix 21	AC3	A	578	590	Right-handed alpha
Helix 22	AC4	A	591	602	Right-handed alpha
Helix 23	AC5	A	603	605	Right-handed 310
Helix 24	AC6	A	625	638	Right-handed alpha
Helix 25	AC7	B	35	39	Right-handed 310
Helix 26	AC8	B	73	76	Right-handed 310
Helix 27	AC9	B	99	103	Right-handed 310
Helix 28	AD1	B	260	276	Right-handed alpha
Helix 29	AD2	B	276	292	Right-handed alpha
Helix 30	AD3	B	301	318	Right-handed alpha
Helix 31	AD4	B	335	340	Right-handed 310
Helix 32	AD5	B	342	349	Right-handed alpha
Helix 33	AD6	B	349	357	Right-handed alpha
Helix 34	AD7	B	357	370	Right-handed alpha
Helix 35	AD8	B	371	382	Right-handed alpha
Helix 36	AD9	B	406	411	Right-handed alpha
Helix 37	AE1	B	412	430	Right-handed alpha
Helix 38	AE2	B	431	438	Right-handed alpha
Helix 39	AE3	B	438	454	Right-handed alpha
Helix 40	AE4	B	480	502	Right-handed alpha
Helix 41	AE5	B	507	516	Right-handed alpha
Helix 42	AE6	B	541	546	Right-handed 310
Helix 43	AE7	B	554	567	Right-handed alpha
Helix 44	AE8	B	578	590	Right-handed alpha
Helix 45	AE9	B	591	602	Right-handed alpha
Helix 46	AF1	B	603	605	Right-handed 310
Helix 47	AF2	B	625	638	Right-handed alpha
Helix 48	AF3	C	35	39	Right-handed 310
Helix 49	AF4	C	73	76	Right-handed 310
Helix 50	AF5	C	99	103	Right-handed 310
Helix 51	AF6	C	260	276	Right-handed alpha
Helix 52	AF7	C	276	292	Right-handed alpha
Helix 53	AF8	C	301	318	Right-handed alpha
Helix 54	AF9	C	335	340	Right-handed 310
Helix 55	AG1	C	342	349	Right-handed alpha
Helix 56	AG2	C	349	357	Right-handed alpha
Helix 57	AG3	C	357	370	Right-handed alpha
Helix 58	AG4	C	371	382	Right-handed alpha
Helix 59	AG5	C	406	411	Right-handed alpha
Helix 60	AG6	C	412	430	Right-handed alpha
Helix 61	AG7	C	431	438	Right-handed alpha
Helix 62	AG8	C	438	454	Right-handed alpha
Helix 63	AG9	C	480	502	Right-handed alpha
Helix 64	AH1	C	507	516	Right-handed alpha
Helix 65	AH2	C	541	546	Right-handed 310
Helix 66	AH3	C	554	566	Right-handed alpha
Helix 67	AH4	C	567	569	Right-handed 310
Helix 68	AH5	C	578	590	Right-handed alpha
Helix 69	AH6	C	591	602	Right-handed alpha
Helix 70	AH7	C	603	605	Right-handed 310
Helix 71	AH8	C	625	638	Right-handed alpha

There are 25 sheets in PDB entry 8YVR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	32	first strand
Strand 2	A	107	111	anti-parallel
Strand 3	A	116	123	anti-parallel
Strand 4	A	127	135	anti-parallel
Strand 5	A	142	151	anti-parallel
Strand 6	A	243	254	anti-parallel
Strand 7	A	201	209	anti-parallel
Strand 8	A	185	194	anti-parallel
Strand 9	A	170	180	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	45	first strand
Strand 2	A	49	53	anti-parallel
Strand 3	A	60	65	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	71	first strand
Strand 2	A	78	79	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	93	first strand
Strand 2	A	155	164	anti-parallel
Strand 3	A	229	238	anti-parallel
Strand 4	A	221	226	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	299	first strand
Strand 2	A	664	670	anti-parallel
Strand 3	A	675	680	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	456	first strand
Strand 2	A	462	463	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	467	468	first strand
Strand 2	A	475	477	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	607	608	first strand
Strand 2	A	613	614	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	643	645	first strand
Strand 2	A	651	653	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	32	first strand
Strand 2	B	104	111	anti-parallel
Strand 3	B	116	123	anti-parallel
Strand 4	B	127	135	anti-parallel
Strand 5	B	142	151	anti-parallel
Strand 6	B	243	254	anti-parallel
Strand 7	B	201	209	anti-parallel
Strand 8	B	185	194	anti-parallel
Strand 9	B	170	180	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	45	first strand
Strand 2	B	49	53	anti-parallel
Strand 3	B	60	65	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	71	first strand
Strand 2	B	78	79	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	93	first strand
Strand 2	B	155	164	anti-parallel
Strand 3	B	229	238	anti-parallel
Strand 4	B	221	226	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	299	first strand
Strand 2	B	664	670	anti-parallel
Strand 3	B	675	680	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	456	first strand
Strand 2	B	462	463	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	607	608	first strand
Strand 2	B	613	614	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	643	645	first strand
Strand 2	B	651	653	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	32	first strand
Strand 2	C	104	111	anti-parallel
Strand 3	C	116	123	anti-parallel
Strand 4	C	127	135	anti-parallel
Strand 5	C	142	151	anti-parallel
Strand 6	C	243	254	anti-parallel
Strand 7	C	201	210	anti-parallel
Strand 8	C	185	194	anti-parallel
Strand 9	C	170	180	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	45	first strand
Strand 2	C	49	53	anti-parallel
Strand 3	C	60	65	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	71	first strand
Strand 2	C	78	79	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	89	93	first strand
Strand 2	C	155	164	anti-parallel
Strand 3	C	229	238	anti-parallel
Strand 4	C	221	226	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	299	first strand
Strand 2	C	664	670	anti-parallel
Strand 3	C	675	680	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	455	456	first strand
Strand 2	C	462	463	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	607	608	first strand
Strand 2	C	613	614	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	643	645	first strand
Strand 2	C	651	653	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YVR

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YVR