Analysis of interatomic Contacts of Structural Units in PDB entry:
8YVU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YVU entry

There are 8 chains in PDB entry 8YVU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 201LYS 237
B
 THR 49LEU 208
C
 CYS 25ALA 53
D
 PRO 22LYS 60
E
 LYS 201LYS 237
F
 THR 49LEU 208
G
 CYS 25ALA 53
H
 PRO 22LYS 60
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8YVU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
206 235Right-handed alpha
Helix 2
AA2
B
50 57Right-handed alpha
Helix 3
AA3
B
58 83Right-handed alpha
Helix 4
AA4
B
95 98Right-handed 310
Helix 5
AA5
B
99 104Right-handed alpha
Helix 6
AA6
B
104 121Right-handed alpha
Helix 7
AA7
B
125 161Right-handed alpha
Helix 8
AA8
B
172 205Right-handed alpha
Helix 9
AA9
C
26 34Right-handed alpha
Helix 10
AB1
C
34 53Right-handed alpha
Helix 11
AB2
D
25 59Right-handed alpha
Helix 12
AB3
E
206 234Right-handed alpha
Helix 13
AB4
F
50 57Right-handed alpha
Helix 14
AB5
F
58 83Right-handed alpha
Helix 15
AB6
F
99 121Right-handed alpha
Helix 16
AB7
F
125 161Right-handed alpha
Helix 17
AB8
F
172 205Right-handed alpha
Helix 18
AB9
G
27 53Right-handed alpha
Helix 19
AC1
H
25 59Right-handed alpha
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There are no sheets in PDB entry 8YVU
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il