Analysis of interatomic Contacts of Structural Units in PDB entry:
8YVV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YVV entry

There are 2 chains in PDB entry 8YVV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 394GLU 658
B
 TRP 395GLU 658
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8YVV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
398 400Right-handed 310
Helix 2
AA2
A
438 452Right-handed alpha
Helix 3
AA3
A
482 489Right-handed alpha
Helix 4
AA4
A
494 515Right-handed alpha
Helix 5
AA5
A
523 525Right-handed 310
Helix 6
AA6
A
560 564Right-handed 310
Helix 7
AA7
A
565 572Right-handed alpha
Helix 8
AA8
A
575 592Right-handed alpha
Helix 9
AA9
A
602 612Right-handed alpha
Helix 10
AB1
A
623 633Right-handed alpha
Helix 11
AB2
A
637 641Right-handed 310
Helix 12
AB3
A
643 657Right-handed alpha
Helix 13
AB4
B
398 400Right-handed 310
Helix 14
AB5
B
438 452Right-handed alpha
Helix 15
AB6
B
482 489Right-handed alpha
Helix 16
AB7
B
494 515Right-handed alpha
Helix 17
AB8
B
523 525Right-handed 310
Helix 18
AB9
B
560 564Right-handed 310
Helix 19
AC1
B
565 572Right-handed alpha
Helix 20
AC2
B
575 592Right-handed alpha
Helix 21
AC3
B
602 612Right-handed alpha
Helix 22
AC4
B
623 633Right-handed alpha
Helix 23
AC5
B
637 641Right-handed 310
Helix 24
AC6
B
643 658Right-handed alpha
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There are 5 sheets in PDB entry 8YVV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 410first strand
Strand 2
A
414 421anti-parallel
Strand 3
A
425 431anti-parallel
Strand 4
A
471 475anti-parallel
Strand 5
A
460 464anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
480 481first strand
Strand 2
A
527 529anti-parallel
Strand 3
A
535 537anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
402 410first strand
Strand 2
B
414 421anti-parallel
Strand 3
B
425 432anti-parallel
Strand 4
B
471 475anti-parallel
Strand 5
B
460 464anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
402 410first strand
Strand 2
B
414 421anti-parallel
Strand 3
B
425 432anti-parallel
Strand 4
A
550 553parallel
Strand 5
B
542 543anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
480 481first strand
Strand 2
B
527 529anti-parallel
Strand 3
B
535 537anti-parallel
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