Analysis of interatomic Contacts of Structural Units in PDB entry:
8YW3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YW3 entry

There are 9 chains in PDB entry 8YW3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
N	GLN 3	VAL 128
B	LEU 9	ASN 345
A	GLN 12	LEU 394
R	ALA 28	GLU 423
G	THR 6	ARG 62
P	TYR 1	TYR 1
P	GLN 3	ILE 12
P	LEU 14	GLN 19
P	ALA 21	GLY 30

There are 32 helices in PDB entry 8YW3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	N	30	34	Right-handed 310
Helix 2	AA2	N	89	93	Right-handed 310
Helix 3	AA3	B	11	30	Right-handed alpha
Helix 4	AA4	B	35	40	Right-handed alpha
Helix 5	AA5	B	133	137	Right-handed 310
Helix 6	AA6	A	13	21	Right-handed alpha
Helix 7	AA7	A	22	39	Right-handed alpha
Helix 8	AA8	A	52	62	Right-handed alpha
Helix 9	AA9	A	233	239	Right-handed 310
Helix 10	AB1	A	265	278	Right-handed alpha
Helix 11	AB2	A	293	304	Right-handed alpha
Helix 12	AB3	A	312	316	Right-handed 310
Helix 13	AB4	A	331	352	Right-handed alpha
Helix 14	AB5	A	371	391	Right-handed alpha
Helix 15	AB6	R	31	53	Right-handed alpha
Helix 16	AB7	R	137	169	Right-handed alpha
Helix 17	AB8	R	174	205	Right-handed alpha
Helix 18	AB9	R	206	216	Right-handed alpha
Helix 19	AC1	R	224	256	Right-handed alpha
Helix 20	AC2	R	261	275	Right-handed alpha
Helix 21	AC3	R	276	279	Right-handed 310
Helix 22	AC4	R	280	292	Right-handed alpha
Helix 23	AC5	R	294	298	Right-handed 310
Helix 24	AC6	R	302	337	Right-handed alpha
Helix 25	AC7	R	346	361	Right-handed alpha
Helix 26	AC8	R	362	365	Right-handed 310
Helix 27	AC9	R	376	403	Right-handed alpha
Helix 28	AD1	R	406	423	Right-handed alpha
Helix 29	AD2	G	7	23	Right-handed alpha
Helix 30	AD3	G	29	44	Right-handed alpha
Helix 31	AD4	G	45	48	Right-handed 310
Helix 32	AD5	P	2	28	Right-handed alpha

There are 12 sheets in PDB entry 8YW3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	5	8	first strand
Strand 2	N	20	27	anti-parallel
Strand 3	N	80	85	anti-parallel
Strand 4	N	70	75	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	60	62	first strand
Strand 2	N	47	53	anti-parallel
Strand 3	N	36	41	anti-parallel
Strand 4	N	94	100	anti-parallel
Strand 5	N	124	126	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	56	first strand
Strand 2	B	341	344	anti-parallel
Strand 3	B	332	336	anti-parallel
Strand 4	B	320	325	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	68	first strand
Strand 2	B	74	79	anti-parallel
Strand 3	B	83	88	anti-parallel
Strand 4	B	93	99	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	110	first strand
Strand 2	B	116	121	anti-parallel
Strand 3	B	126	130	anti-parallel
Strand 4	B	139	144	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	156	first strand
Strand 2	B	162	166	anti-parallel
Strand 3	B	170	174	anti-parallel
Strand 4	B	181	186	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	197	first strand
Strand 2	B	203	208	anti-parallel
Strand 3	B	213	217	anti-parallel
Strand 4	B	223	227	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	239	first strand
Strand 2	B	245	250	anti-parallel
Strand 3	B	255	259	anti-parallel
Strand 4	B	264	269	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	283	first strand
Strand 2	B	289	294	anti-parallel
Strand 3	B	298	303	anti-parallel
Strand 4	B	311	314	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	214	first strand
Strand 2	A	217	224	anti-parallel
Strand 3	A	40	47	parallel
Strand 4	A	243	249	parallel
Strand 5	A	287	292	parallel
Strand 6	A	359	363	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	65	66	first strand
Strand 2	R	71	72	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	82	83	first strand
Strand 2	R	100	101	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YW3

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YW3