Analysis of interatomic Contacts of Structural Units in PDB entry:
8YWA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YWA entry

There are 3 chains in PDB entry 8YWA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	ALA 117	PRO 542
X	ALA 117	PRO 542
h	LEU 111	LEU 111

There are 25 helices in PDB entry 8YWA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	273	275	Right-handed 310
Helix 2	AA2	H	298	303	Right-handed alpha
Helix 3	AA3	H	341	347	Right-handed alpha
Helix 4	AA4	H	403	409	Right-handed alpha
Helix 5	AA5	H	483	485	Right-handed 310
Helix 6	AA6	H	510	516	Right-handed alpha
Helix 7	AA7	X	273	277	Right-handed 310
Helix 8	AA8	X	298	303	Right-handed alpha
Helix 9	AA9	X	341	347	Right-handed alpha
Helix 10	AB1	X	403	409	Right-handed alpha
Helix 11	AB2	X	483	485	Right-handed 310
Helix 12	AB3	X	510	516	Right-handed alpha
Helix 13	AB4	h	126	132	Right-handed alpha
Helix 14	AB5	h	186	193	Right-handed alpha
Helix 15	AB6	x	126	132	Right-handed alpha
Helix 16	AB7	x	186	193	Right-handed alpha
Helix 17	AB8	A	136	138	Right-handed 310
Helix 18	AB9	A	201	234	Right-handed alpha
Helix 19	AC1	B	18	41	Right-handed alpha
Helix 20	AC2	B	44	48	Right-handed 310
Helix 21	AC3	B	60	81	Right-handed alpha
Helix 22	AC4	B	83	123	Right-handed alpha
Helix 23	AC5	B	129	167	Right-handed alpha
Helix 24	AC6	D	23	52	Right-handed alpha
Helix 25	AC7	C	23	53	Right-handed alpha

There are 28 sheets in PDB entry 8YWA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	123	128	first strand
Strand 2	H	141	148	anti-parallel
Strand 3	H	182	190	anti-parallel
Strand 4	H	166	170	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	123	128	first strand
Strand 2	H	141	148	anti-parallel
Strand 3	H	182	190	anti-parallel
Strand 4	H	174	175	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	156	160	first strand
Strand 2	H	199	204	anti-parallel
Strand 3	H	213	218	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	277	284	first strand
Strand 2	H	287	297	anti-parallel
Strand 3	H	246	256	anti-parallel
Strand 4	H	230	235	anti-parallel
Strand 5	X	229	235	anti-parallel
Strand 6	X	246	254	anti-parallel
Strand 7	X	287	297	anti-parallel
Strand 8	X	279	284	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	262	263	first strand
Strand 2	H	311	312	anti-parallel
Strand 3	H	317	318	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	266	267	first strand
Strand 2	H	307	308	anti-parallel
Strand 3	H	321	322	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	334	337	first strand
Strand 2	H	353	360	anti-parallel
Strand 3	H	394	400	anti-parallel
Strand 4	H	383	388	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	368	373	first strand
Strand 2	H	413	418	anti-parallel
Strand 3	H	426	430	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	441	446	first strand
Strand 2	H	456	464	anti-parallel
Strand 3	H	500	509	anti-parallel
Strand 4	H	487	489	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	441	446	first strand
Strand 2	H	456	464	anti-parallel
Strand 3	H	500	509	anti-parallel
Strand 4	H	493	494	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	480	481	first strand
Strand 2	H	472	477	anti-parallel
Strand 3	H	519	524	anti-parallel
Strand 4	H	533	538	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	123	128	first strand
Strand 2	X	140	150	anti-parallel
Strand 3	X	182	191	anti-parallel
Strand 4	X	167	170	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	123	128	first strand
Strand 2	X	140	150	anti-parallel
Strand 3	X	182	191	anti-parallel
Strand 4	X	174	175	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	156	160	first strand
Strand 2	X	199	204	anti-parallel
Strand 3	X	213	218	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	270	271	first strand
Strand 2	X	262	267	anti-parallel
Strand 3	X	307	312	anti-parallel
Strand 4	X	320	322	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	334	337	first strand
Strand 2	X	352	360	anti-parallel
Strand 3	X	394	401	anti-parallel
Strand 4	X	385	388	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	414	417	first strand
Strand 2	X	426	429	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	441	446	first strand
Strand 2	X	456	464	anti-parallel
Strand 3	X	501	509	anti-parallel
Strand 4	X	487	489	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	480	481	first strand
Strand 2	X	472	477	anti-parallel
Strand 3	X	519	524	anti-parallel
Strand 4	X	533	538	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	119	123	first strand
Strand 2	h	135	142	anti-parallel
Strand 3	h	179	185	anti-parallel
Strand 4	h	164	166	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	158	159	first strand
Strand 2	h	150	155	anti-parallel
Strand 3	h	196	201	anti-parallel
Strand 4	h	209	211	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	x	119	123	first strand
Strand 2	x	135	142	anti-parallel
Strand 3	x	178	185	anti-parallel
Strand 4	x	164	166	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	x	158	159	first strand
Strand 2	x	150	155	anti-parallel
Strand 3	x	196	202	anti-parallel
Strand 4	x	205	211	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	34	first strand
Strand 2	A	47	52	anti-parallel
Strand 3	A	78	80	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	42	first strand
Strand 2	A	107	109	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	66	first strand
Strand 2	A	91	94	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	117	first strand
Strand 2	A	130	134	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	154	first strand
Strand 2	A	141	147	anti-parallel
Strand 3	A	174	180	anti-parallel
Strand 4	A	183	186	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YWA

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YWA