Analysis of interatomic Contacts of Structural Units in PDB entry:
8YWG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YWG entry

There is 1 chain in PDB entry 8YWG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3LYS 993
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 8YWG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 15Right-handed alpha
Helix 2
AA2
A
15 27Right-handed alpha
Helix 3
AA3
A
79 92Right-handed alpha
Helix 4
AA4
A
128 143Right-handed alpha
Helix 5
AA5
A
154 163Right-handed alpha
Helix 6
AA6
A
189 191Right-handed 310
Helix 7
AA7
A
271 287Right-handed alpha
Helix 8
AA8
A
300 312Right-handed alpha
Helix 9
AA9
A
313 322Right-handed alpha
Helix 10
AB1
A
328 335Right-handed alpha
Helix 11
AB2
A
365 374Right-handed alpha
Helix 12
AB3
A
381 390Right-handed alpha
Helix 13
AB4
A
398 409Right-handed alpha
Helix 14
AB5
A
410 436Right-handed alpha
Helix 15
AB6
A
436 449Right-handed alpha
Helix 16
AB7
A
451 458Right-handed alpha
Helix 17
AB8
A
460 474Right-handed alpha
Helix 18
AB9
A
520 530Right-handed alpha
Helix 19
AC1
A
532 534Right-handed 310
Helix 20
AC2
A
539 550Right-handed alpha
Helix 21
AC3
A
580 608Right-handed alpha
Helix 22
AC4
A
616 646Right-handed alpha
Helix 23
AC5
A
654 679Right-handed alpha
Helix 24
AC6
A
696 699Right-handed 310
Helix 25
AC7
A
700 709Right-handed alpha
Helix 26
AC8
A
713 748Right-handed alpha
Helix 27
AC9
A
801 816Right-handed alpha
Helix 28
AD1
A
828 840Right-handed alpha
Helix 29
AD2
A
841 845Right-handed 310
Helix 30
AD3
A
864 878Right-handed alpha
Helix 31
AD4
A
939 957Right-handed alpha
Helix 32
AD5
A
959 963Right-handed 310
Helix 33
AD6
A
971 991Right-handed alpha
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There are 7 sheets in PDB entry 8YWG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 180first strand
Strand 2
A
183 188anti-parallel
Strand 3
A
60 65parallel
Strand 4
A
49 54anti-parallel
Strand 5
A
32 41anti-parallel
Strand 6
A
170 172anti-parallel
Strand 7
A
193 195anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 105first strand
Strand 2
A
119 125anti-parallel
Strand 3
A
71 74anti-parallel
Strand 4
A
146 147anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 268first strand
Strand 2
A
249 254parallel
Strand 3
A
231 241anti-parallel
Strand 4
A
206 215anti-parallel
Strand 5
A
290 292parallel
Strand 6
A
362 363parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 344first strand
Strand 2
A
350 356anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
506 508first strand
Strand 2
A
763 765anti-parallel
Strand 3
A
771 773anti-parallel
Strand 4
A
788 790anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
682 687first strand
Strand 2
A
690 694anti-parallel
Strand 3
A
513 518anti-parallel
Strand 4
A
754 760anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
536 537first strand
Strand 2
A
563 570anti-parallel
Strand 3
A
553 560anti-parallel
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