Analysis of interatomic Contacts of Structural Units in PDB entry:
8YWH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YWH entry

There are 4 chains in PDB entry 8YWH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2GLY 886
B
 G 2 U 99
C
 C 14 T 44
D
 T 36 A 47
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 8YWH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 74Right-handed alpha
Helix 2
AA2
A
87 96Right-handed alpha
Helix 3
AA3
A
101 115Right-handed alpha
Helix 4
AA4
A
119 124Right-handed alpha
Helix 5
AA5
A
133 144Right-handed alpha
Helix 6
AA6
A
149 161Right-handed alpha
Helix 7
AA7
A
166 170Right-handed 310
Helix 8
AA8
A
172 191Right-handed alpha
Helix 9
AA9
A
194 207Right-handed alpha
Helix 10
AB1
A
225 234Right-handed alpha
Helix 11
AB2
A
250 265Right-handed alpha
Helix 12
AB3
A
276 287Right-handed alpha
Helix 13
AB4
A
295 304Right-handed alpha
Helix 14
AB5
A
306 310Right-handed 310
Helix 15
AB6
A
326 336Right-handed alpha
Helix 16
AB7
A
338 344Right-handed alpha
Helix 17
AB8
A
344 358Right-handed alpha
Helix 18
AB9
A
360 372Right-handed alpha
Helix 19
AC1
A
376 386Right-handed alpha
Helix 20
AC2
A
396 408Right-handed alpha
Helix 21
AC3
A
413 421Right-handed alpha
Helix 22
AC4
A
438 444Right-handed alpha
Helix 23
AC5
A
447 468Right-handed alpha
Helix 24
AC6
A
481 500Right-handed alpha
Helix 25
AC7
A
510 520Right-handed alpha
Helix 26
AC8
A
531 549Right-handed alpha
Helix 27
AC9
A
647 656Right-handed alpha
Helix 28
AD1
A
657 659Right-handed 310
Helix 29
AD2
A
660 665Right-handed alpha
Helix 30
AD3
A
666 681Right-handed alpha
Helix 31
AD4
A
685 695Right-handed alpha
Helix 32
AD5
A
727 730Right-handed 310
Helix 33
AD6
A
776 788Right-handed alpha
Helix 34
AD7
A
833 842Right-handed alpha
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There are 6 sheets in PDB entry 8YWH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
505 507first strand
Strand 2
A
473 478parallel
Strand 3
A
5 11parallel
Strand 4
A
16 22anti-parallel
Strand 5
A
28 35anti-parallel
Strand 6
A
603 606parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 247first strand
Strand 2
A
392 393anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
713 719first strand
Strand 2
A
632 638anti-parallel
Strand 3
A
621 626anti-parallel
Strand 4
A
737 740anti-parallel
Strand 5
A
723 725anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
755 762first strand
Strand 2
A
744 752anti-parallel
Strand 3
A
795 799anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
766 769first strand
Strand 2
A
772 775anti-parallel
Strand 3
A
882 884anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
849 852first strand
Strand 2
A
824 828anti-parallel
Strand 3
A
810 819anti-parallel
Strand 4
A
804 807anti-parallel
Strand 5
A
860 865anti-parallel
Strand 6
A
871 873anti-parallel
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