Analysis of interatomic Contacts of Structural Units in PDB entry:
8YWI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YWI entry

There are 3 chains in PDB entry 8YWI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3PRO 992
P
 T 12 C 25
T
 A -2 A 17
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 8YWI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 15Right-handed alpha
Helix 2
AA2
A
15 29Right-handed alpha
Helix 3
AA3
A
79 93Right-handed alpha
Helix 4
AA4
A
113 117Right-handed 310
Helix 5
AA5
A
128 143Right-handed alpha
Helix 6
AA6
A
154 163Right-handed alpha
Helix 7
AA7
A
271 287Right-handed alpha
Helix 8
AA8
A
299 312Right-handed alpha
Helix 9
AA9
A
313 322Right-handed alpha
Helix 10
AB1
A
328 335Right-handed alpha
Helix 11
AB2
A
366 374Right-handed alpha
Helix 12
AB3
A
381 389Right-handed alpha
Helix 13
AB4
A
398 409Right-handed alpha
Helix 14
AB5
A
410 436Right-handed alpha
Helix 15
AB6
A
436 449Right-handed alpha
Helix 16
AB7
A
451 458Right-handed alpha
Helix 17
AB8
A
460 474Right-handed alpha
Helix 18
AB9
A
520 530Right-handed alpha
Helix 19
AC1
A
532 534Right-handed 310
Helix 20
AC2
A
539 550Right-handed alpha
Helix 21
AC3
A
580 609Right-handed alpha
Helix 22
AC4
A
616 646Right-handed alpha
Helix 23
AC5
A
654 678Right-handed alpha
Helix 24
AC6
A
700 709Right-handed alpha
Helix 25
AC7
A
713 748Right-handed alpha
Helix 26
AC8
A
800 814Right-handed alpha
Helix 27
AC9
A
826 840Right-handed alpha
Helix 28
AD1
A
841 845Right-handed 310
Helix 29
AD2
A
864 883Right-handed alpha
Helix 30
AD3
A
886 890Right-handed 310
Helix 31
AD4
A
928 934Right-handed alpha
Helix 32
AD5
A
939 956Right-handed alpha
Helix 33
AD6
A
959 963Right-handed 310
Helix 34
AD7
A
970 991Right-handed alpha
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There are 8 sheets in PDB entry 8YWI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 172first strand
Strand 2
A
32 41anti-parallel
Strand 3
A
49 54anti-parallel
Strand 4
A
60 65anti-parallel
Strand 5
A
183 188parallel
Strand 6
A
176 180anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 74first strand
Strand 2
A
119 125anti-parallel
Strand 3
A
100 107anti-parallel
Strand 4
A
480 481parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 268first strand
Strand 2
A
249 254parallel
Strand 3
A
232 240anti-parallel
Strand 4
A
207 214anti-parallel
Strand 5
A
290 293parallel
Strand 6
A
362 365parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 346first strand
Strand 2
A
349 356anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
506 508first strand
Strand 2
A
754 767anti-parallel
Strand 3
A
513 518anti-parallel
Strand 4
A
690 694anti-parallel
Strand 5
A
682 687anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
506 508first strand
Strand 2
A
754 767anti-parallel
Strand 3
A
770 776anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
536 537first strand
Strand 2
A
564 570anti-parallel
Strand 3
A
553 559anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
852 855first strand
Strand 2
A
897 902anti-parallel
Strand 3
A
925 927anti-parallel
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