Analysis of interatomic Contacts of Structural Units in PDB entry:
8YWM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YWM entry

There are 3 chains in PDB entry 8YWM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3HIS 991
D
 G 8 G 23
E
 C 5 C 23
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 8YWM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 15Right-handed alpha
Helix 2
AA2
A
15 28Right-handed alpha
Helix 3
AA3
A
79 93Right-handed alpha
Helix 4
AA4
A
128 142Right-handed alpha
Helix 5
AA5
A
154 163Right-handed alpha
Helix 6
AA6
A
189 191Right-handed 310
Helix 7
AA7
A
271 287Right-handed alpha
Helix 8
AA8
A
299 311Right-handed alpha
Helix 9
AA9
A
313 322Right-handed alpha
Helix 10
AB1
A
328 336Right-handed alpha
Helix 11
AB2
A
366 374Right-handed alpha
Helix 12
AB3
A
381 389Right-handed alpha
Helix 13
AB4
A
398 409Right-handed alpha
Helix 14
AB5
A
413 436Right-handed alpha
Helix 15
AB6
A
436 449Right-handed alpha
Helix 16
AB7
A
451 458Right-handed alpha
Helix 17
AB8
A
459 475Right-handed alpha
Helix 18
AB9
A
520 529Right-handed alpha
Helix 19
AC1
A
532 534Right-handed 310
Helix 20
AC2
A
539 549Right-handed alpha
Helix 21
AC3
A
575 579Right-handed 310
Helix 22
AC4
A
580 610Right-handed alpha
Helix 23
AC5
A
616 639Right-handed alpha
Helix 24
AC6
A
640 647Right-handed alpha
Helix 25
AC7
A
654 679Right-handed alpha
Helix 26
AC8
A
697 699Right-handed 310
Helix 27
AC9
A
700 709Right-handed alpha
Helix 28
AD1
A
713 748Right-handed alpha
Helix 29
AD2
A
801 815Right-handed alpha
Helix 30
AD3
A
826 841Right-handed alpha
Helix 31
AD4
A
847 851Right-handed 310
Helix 32
AD5
A
862 882Right-handed alpha
Helix 33
AD6
A
921 923Right-handed 310
Helix 34
AD7
A
928 935Right-handed alpha
Helix 35
AD8
A
939 953Right-handed alpha
Helix 36
AD9
A
975 990Right-handed alpha
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There are 8 sheets in PDB entry 8YWM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 179first strand
Strand 2
A
183 188anti-parallel
Strand 3
A
60 65parallel
Strand 4
A
49 55anti-parallel
Strand 5
A
32 41anti-parallel
Strand 6
A
170 172anti-parallel
Strand 7
A
193 195anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 105first strand
Strand 2
A
119 126anti-parallel
Strand 3
A
70 74anti-parallel
Strand 4
A
146 147anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 268first strand
Strand 2
A
249 254parallel
Strand 3
A
231 241anti-parallel
Strand 4
A
206 215anti-parallel
Strand 5
A
290 293parallel
Strand 6
A
362 365parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 344first strand
Strand 2
A
350 353anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
506 508first strand
Strand 2
A
754 767anti-parallel
Strand 3
A
513 518anti-parallel
Strand 4
A
690 694anti-parallel
Strand 5
A
682 687anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
506 508first strand
Strand 2
A
754 767anti-parallel
Strand 3
A
770 776anti-parallel
Strand 4
A
788 790anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
536 537first strand
Strand 2
A
563 570anti-parallel
Strand 3
A
553 560anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
852 855first strand
Strand 2
A
897 902anti-parallel
Strand 3
A
925 927anti-parallel
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