Analysis of interatomic Contacts of Structural Units in PDB entry:
8YWO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YWO entry

There is 1 chain in PDB entry 8YWO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8YWO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 6Right-handed 310
Helix 2
AA2
A
19 35Right-handed alpha
Helix 3
AA3
A
40 53Right-handed alpha
Helix 4
AA4
A
54 56Right-handed 310
Helix 5
AA5
A
63 79Right-handed alpha
Helix 6
AA6
A
84 93Right-handed alpha
Helix 7
AA7
A
94 98Right-handed 310
Helix 8
AA8
A
103 113Right-handed alpha
Helix 9
AA9
A
124 133Right-handed alpha
Helix 10
AB1
A
145 149Right-handed alpha
Helix 11
AB2
A
154 168Right-handed alpha
Helix 12
AB3
A
171 173Right-handed 310
Helix 13
AB4
A
185 193Right-handed alpha
Helix 14
AB5
A
226 240Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8YWO.

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 144first strand
Strand 2
A
116 121parallel
Strand 3
A
8 11parallel
Strand 4
A
175 179parallel
Strand 5
A
195 199parallel
Strand 6
A
222 224parallel
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