Analysis of interatomic Contacts of Structural Units in PDB entry:
8YWX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YWX entry

There are 3 chains in PDB entry 8YWX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 GLU 1LYS 218
D
 ILE 2GLU 213
A
 ASN 334GLY 526
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8YWX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
28 32Right-handed 310
Helix 2
AA2
E
61 64Right-handed 310
Helix 3
AA3
E
160 162Right-handed 310
Helix 4
AA4
E
189 193Right-handed 310
Helix 5
AA5
D
50 52Right-handed 310
Helix 6
AA6
D
79 83Right-handed 310
Helix 7
AA7
D
121 126Right-handed alpha
Helix 8
AA8
D
183 187Right-handed alpha
Helix 9
AA9
A
385 390Right-handed alpha
Helix 10
AB1
A
405 410Right-handed 310
Helix 11
AB2
A
416 422Right-handed alpha
Helix 12
AB3
A
438 443Right-handed alpha
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There are 15 sheets in PDB entry 8YWX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
18 21first strand
Strand 2
E
79 82anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
57 59first strand
Strand 2
E
46 51anti-parallel
Strand 3
E
34 39anti-parallel
Strand 4
E
91 98anti-parallel
Strand 5
E
105 107anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
57 59first strand
Strand 2
E
46 51anti-parallel
Strand 3
E
34 39anti-parallel
Strand 4
E
91 98anti-parallel
Strand 5
E
111 113anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
124 127first strand
Strand 2
E
140 149anti-parallel
Strand 3
E
180 188anti-parallel
Strand 4
E
168 169anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
124 127first strand
Strand 2
E
140 149anti-parallel
Strand 3
E
180 188anti-parallel
Strand 4
E
173 174anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
154 158first strand
Strand 2
E
198 204anti-parallel
Strand 3
E
209 215anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
5 6first strand
Strand 2
D
19 24anti-parallel
Strand 3
D
70 75anti-parallel
Strand 4
D
62 66anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 14first strand
Strand 2
D
102 107parallel
Strand 3
D
85 90anti-parallel
Strand 4
D
33 38anti-parallel
Strand 5
D
45 49anti-parallel
Strand 6
D
53 54anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
114 118first strand
Strand 2
D
129 137anti-parallel
Strand 3
D
174 182anti-parallel
Strand 4
D
160 163anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
145 147first strand
Strand 2
D
195 197anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
149 150first strand
Strand 2
D
153 154anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 358first strand
Strand 2
A
394 403anti-parallel
Strand 3
A
507 516anti-parallel
Strand 4
A
431 432anti-parallel
Strand 5
A
379 380anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 358first strand
Strand 2
A
394 403anti-parallel
Strand 3
A
507 516anti-parallel
Strand 4
A
435 437anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 454first strand
Strand 2
A
492 494anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
473 474first strand
Strand 2
A
488 489anti-parallel
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