Analysis of interatomic Contacts of Structural Units in PDB entry:
8YXL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YXL entry

There is 1 chain in PDB entry 8YXL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1434PHE 2232
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 8YXL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1438 1459Right-handed alpha
Helix 2
AA2
A
1481 1486Right-handed alpha
Helix 3
AA3
A
1489 1512Right-handed alpha
Helix 4
AA4
A
1516 1531Right-handed alpha
Helix 5
AA5
A
1536 1545Right-handed alpha
Helix 6
AA6
A
1545 1555Right-handed alpha
Helix 7
AA7
A
1565 1569Right-handed 310
Helix 8
AA8
A
1570 1593Right-handed alpha
Helix 9
AA9
A
1610 1627Right-handed alpha
Helix 10
AB1
A
1640 1643Right-handed 310
Helix 11
AB2
A
1644 1657Right-handed alpha
Helix 12
AB3
A
1665 1675Right-handed alpha
Helix 13
AB4
A
1689 1699Right-handed alpha
Helix 14
AB5
A
1699 1711Right-handed alpha
Helix 15
AB6
A
1775 1781Right-handed 310
Helix 16
AB7
A
1789 1801Right-handed alpha
Helix 17
AB8
A
1818 1828Right-handed alpha
Helix 18
AB9
A
1840 1844Right-handed 310
Helix 19
AC1
A
1854 1859Right-handed alpha
Helix 20
AC2
A
1860 1868Right-handed alpha
Helix 21
AC3
A
1887 1892Right-handed alpha
Helix 22
AC4
A
1895 1907Right-handed alpha
Helix 23
AC5
A
1930 1943Right-handed alpha
Helix 24
AC6
A
1958 1972Right-handed alpha
Helix 25
AC7
A
2005 2020Right-handed alpha
Helix 26
AC8
A
2025 2054Right-handed alpha
Helix 27
AC9
A
2059 2069Right-handed alpha
Helix 28
AD1
A
2074 2079Right-handed alpha
Helix 29
AD2
A
2086 2102Right-handed alpha
Helix 30
AD3
A
2102 2113Right-handed alpha
Helix 31
AD4
A
2128 2150Right-handed alpha
Helix 32
AD5
A
2155 2168Right-handed alpha
Helix 33
AD6
A
2172 2176Right-handed 310
Helix 34
AD7
A
2178 2186Right-handed alpha
Helix 35
AD8
A
2194 2206Right-handed alpha
Helix 36
AD9
A
2207 2210Right-handed 310
Helix 37
AE1
A
2214 2232Right-handed alpha
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There are 3 sheets in PDB entry 8YXL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1598 1601first strand
Strand 2
A
1678 1681parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1741 1745first strand
Strand 2
A
1973 1980anti-parallel
Strand 3
A
1990 1997anti-parallel
Strand 4
A
1944 1955anti-parallel
Strand 5
A
1911 1916parallel
Strand 6
A
1809 1813parallel
Strand 7
A
1832 1836parallel
Strand 8
A
1879 1880parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2170 2171first strand
Strand 2
A
2211 2212anti-parallel
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