Analysis of interatomic Contacts of Structural Units in PDB entry:
8YXN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YXN entry

There are 2 chains in PDB entry 8YXN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 873GLY 1129
B
 ASP 872GLY 1129
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 8YXN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
884 896Right-handed alpha
Helix 2
AA2
A
901 910Right-handed alpha
Helix 3
AA3
A
911 914Right-handed 310
Helix 4
AA4
A
916 921Right-handed 310
Helix 5
AA5
A
930 938Right-handed alpha
Helix 6
AA6
A
941 945Right-handed 310
Helix 7
AA7
A
947 959Right-handed alpha
Helix 8
AA8
A
961 974Right-handed alpha
Helix 9
AA9
A
978 983Right-handed alpha
Helix 10
AB1
A
1034 1047Right-handed alpha
Helix 11
AB2
A
1051 1067Right-handed alpha
Helix 12
AB3
A
1077 1083Right-handed alpha
Helix 13
AB4
A
1086 1090Right-handed 310
Helix 14
AB5
A
1099 1112Right-handed alpha
Helix 15
AB6
A
1113 1115Right-handed 310
Helix 16
AB7
B
884 896Right-handed alpha
Helix 17
AB8
B
901 910Right-handed alpha
Helix 18
AB9
B
911 914Right-handed 310
Helix 19
AC1
B
916 921Right-handed 310
Helix 20
AC2
B
930 939Right-handed alpha
Helix 21
AC3
B
941 945Right-handed 310
Helix 22
AC4
B
947 959Right-handed alpha
Helix 23
AC5
B
961 974Right-handed alpha
Helix 24
AC6
B
978 983Right-handed alpha
Helix 25
AC7
B
1034 1047Right-handed alpha
Helix 26
AC8
B
1051 1067Right-handed alpha
Helix 27
AC9
B
1077 1083Right-handed alpha
Helix 28
AD1
B
1086 1090Right-handed 310
Helix 29
AD2
B
1099 1112Right-handed alpha
Helix 30
AD3
B
1113 1115Right-handed 310
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There are 4 sheets in PDB entry 8YXN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
877 880first strand
Strand 2
A
1123 1126parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
984 997first strand
Strand 2
A
1003 1017anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
877 880first strand
Strand 2
B
1123 1126parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
984 997first strand
Strand 2
B
1003 1017anti-parallel
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