Analysis of interatomic Contacts of Structural Units in PDB entry:
8YXP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YXP entry

There is 1 chain in PDB entry 8YXP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 4SER 1415
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 67 helices in PDB entry 8YXP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 30Right-handed alpha
Helix 2
AA2
A
37 42Right-handed alpha
Helix 3
AA3
A
43 47Right-handed 310
Helix 4
AA4
A
48 55Right-handed alpha
Helix 5
AA5
A
56 74Right-handed alpha
Helix 6
AA6
A
75 79Right-handed 310
Helix 7
AA7
A
90 98Right-handed 310
Helix 8
AA8
A
108 122Right-handed alpha
Helix 9
AA9
A
124 141Right-handed alpha
Helix 10
AB1
A
162 172Right-handed alpha
Helix 11
AB2
A
175 198Right-handed alpha
Helix 12
AB3
A
237 260Right-handed alpha
Helix 13
AB4
A
265 285Right-handed alpha
Helix 14
AB5
A
287 305Right-handed alpha
Helix 15
AB6
A
314 330Right-handed alpha
Helix 16
AB7
A
335 348Right-handed alpha
Helix 17
AB8
A
354 360Right-handed alpha
Helix 18
AB9
A
361 362Right-handed 310
Helix 19
AC1
A
363 367Right-handed 310
Helix 20
AC2
A
374 386Right-handed alpha
Helix 21
AC3
A
393 413Right-handed alpha
Helix 22
AC4
A
415 419Right-handed 310
Helix 23
AC5
A
430 440Right-handed alpha
Helix 24
AC6
A
444 450Right-handed alpha
Helix 25
AC7
A
451 456Right-handed alpha
Helix 26
AC8
A
467 471Right-handed 310
Helix 27
AC9
A
472 477Right-handed 310
Helix 28
AD1
A
487 492Right-handed 310
Helix 29
AD2
A
493 505Right-handed alpha
Helix 30
AD3
A
515 522Right-handed alpha
Helix 31
AD4
A
527 532Right-handed alpha
Helix 32
AD5
A
532 537Right-handed alpha
Helix 33
AD6
A
568 585Right-handed alpha
Helix 34
AD7
A
586 590Right-handed 310
Helix 35
AD8
A
598 611Right-handed alpha
Helix 36
AD9
A
671 677Right-handed 310
Helix 37
AE1
A
678 694Right-handed alpha
Helix 38
AE2
A
700 708Right-handed alpha
Helix 39
AE3
A
749 768Right-handed alpha
Helix 40
AE4
A
794 820Right-handed alpha
Helix 41
AE5
A
851 858Right-handed alpha
Helix 42
AE6
A
869 887Right-handed alpha
Helix 43
AE7
A
890 912Right-handed alpha
Helix 44
AE8
A
920 929Right-handed alpha
Helix 45
AE9
A
929 939Right-handed alpha
Helix 46
AF1
A
940 944Right-handed 310
Helix 47
AF2
A
951 955Right-handed 310
Helix 48
AF3
A
961 977Right-handed alpha
Helix 49
AF4
A
980 989Right-handed alpha
Helix 50
AF5
A
996 1003Right-handed alpha
Helix 51
AF6
A
1014 1031Right-handed alpha
Helix 52
AF7
A
1033 1037Right-handed 310
Helix 53
AF8
A
1043 1057Right-handed alpha
Helix 54
AF9
A
1062 1073Right-handed alpha
Helix 55
AG1
A
1073 1084Right-handed alpha
Helix 56
AG2
A
1088 1099Right-handed alpha
Helix 57
AG3
A
1102 1111Right-handed alpha
Helix 58
AG4
A
1111 1122Right-handed alpha
Helix 59
AG5
A
1131 1137Right-handed 310
Helix 60
AG6
A
1142 1155Right-handed alpha
Helix 61
AG7
A
1155 1160Right-handed alpha
Helix 62
AG8
A
1171 1176Right-handed alpha
Helix 63
AG9
A
1187 1192Right-handed alpha
Helix 64
AH1
A
1242 1260Right-handed alpha
Helix 65
AH2
A
1262 1275Right-handed alpha
Helix 66
AH3
A
1280 1288Right-handed alpha
Helix 67
AH4
A
1338 1358Right-handed alpha
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There are 7 sheets in PDB entry 8YXP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
231 236parallel
Strand 3
A
221 226anti-parallel
Strand 4
A
213 217anti-parallel
Strand 5
A
206 207anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 424first strand
Strand 2
A
459 460anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
563 566first strand
Strand 2
A
549 552anti-parallel
Strand 3
A
710 713parallel
Strand 4
A
737 739anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
780 790first strand
Strand 2
A
659 669anti-parallel
Strand 3
A
829 832anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
835 838first strand
Strand 2
A
841 844anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1180 1182first strand
Strand 2
A
1369 1371anti-parallel
Strand 3
A
1199 1202anti-parallel
Strand 4
A
1322 1324anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1206 1207first strand
Strand 2
A
1364 1365anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il