Analysis of interatomic Contacts of Structural Units in PDB entry:
8YXR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YXR entry

There are 4 chains in PDB entry 8YXR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ALA 218VAL 286
C
 GLU 220GLY 304
D
 ALA 218GLU 267
E
 ALA 218ALA 271
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 8YXR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
218 245Right-handed alpha
Helix 2
AA2
B
246 276Right-handed alpha
Helix 3
AA3
C
222 272Right-handed alpha
Helix 4
AA4
C
285 290Right-handed alpha
Helix 5
AA5
D
219 243Right-handed alpha
Helix 6
AA6
D
244 267Right-handed alpha
Helix 7
AA7
E
219 271Right-handed alpha
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There are no sheets in PDB entry 8YXR
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il